Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_N12
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   3.6  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   3.6  
U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protei...    29   3.6  
U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   4.8  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    29   4.8  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    28   8.4  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    28   8.4  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 562 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 666
           CP  ++F F  C     G++  +FPG+CP   CS+
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 473 AVNLSILPVSGPGEISRVESN*AAGSTPGG-ALPSIPLSFSFATILPPESKIFGFPEAAR 649
           A N S+   S P  + R  S  +  +TP G A P  PLS S +    P+S   G P + +
Sbjct: 513 ATNTSVSS-STPRSVVRTTSTSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTPLSRK 571

Query: 650 RAI 658
           R++
Sbjct: 572 RSM 574


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 103 GIPRFMGDNCKPQSPARRSFSGLPG-PLGQGEH 198
           GIP   GD+  P  P R    GLPG P G G++
Sbjct: 620 GIPGLKGDHGLPGLPGRPGSDGLPGYPGGPGQN 652


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 103 GIPRFMGDNCKPQSPARRSFSGLPG-PLGQGEH 198
           GIP   GD+  P  P R    GLPG P G G++
Sbjct: 619 GIPGLKGDHGLPGLPGRPGSDGLPGYPGGPGQN 651


>U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protein
           145 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 103 GIPRFMGDNCKPQSPARRSFSGLPGPLGQ 189
           G P   GDN +P +P +  F G PG  GQ
Sbjct: 183 GAPGAPGDNGQPGTPGQDGFPGQPGADGQ 211


>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 557 QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 462
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 88  DSRLLGIPRFMGDNCKPQSPARRSFSGLPGPLGQGEHADSFXC 216
           DS   G P   G +  P  P  +   G PG  G  EH +S  C
Sbjct: 164 DSGEPGSPGLPGQDAAPGEPGPKGPKGPPGAPGAPEHQESQEC 206


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 GIPRFMGDNCKPQSPARRSFSGLPGPLGQGEHADS 207
           G P   G+N +P +PA+    G PGP G    A S
Sbjct: 146 GAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGS 180


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 GIPRFMGDNCKPQSPARRSFSGLPGPLGQGEHADS 207
           G P   G+N +P +PA+    G PGP G    A S
Sbjct: 146 GAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGS 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,833,416
Number of Sequences: 27780
Number of extensions: 404883
Number of successful extensions: 1233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)