Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_N07
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    29   1.0  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    28   1.3  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    28   1.8  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.1  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   4.0  

>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 622 PDNVTEDELRGHFYQYGEI 566
           P+N+T  ELR +F  +GEI
Sbjct: 184 PENITTQELRSYFLHFGEI 202


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 534 CAFVQYTSRNAAEHAAEKTFNRLVIFGKRLTIKWGKSQ 421
           C FVQ+ +R +AE A  +      +   R+ + WG++Q
Sbjct: 340 CGFVQFVNRQSAEIAINQ-LQGYPLGNSRIRLSWGRNQ 376


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 534 CAFVQYTSRNAAEHAAEKTFNRLVIFGKRLTIKWG 430
           C FVQY+ ++AAE A   T    ++    + + WG
Sbjct: 334 CGFVQYSEKSAAEKAI-NTMQGALVGTSHIRLAWG 367



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 528 FVQYTSRNAAEHAAEKTFNRLVIFGKRLTIK--WGKSQGRQ 412
           FVQ++S  AAE A  K +N  +I G   T K  W    G Q
Sbjct: 132 FVQFSSSAAAERALMK-YNNTMIPGAHCTFKLNWATGGGIQ 171


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 528 FVQYTSRNAA-EHAAEKTFNRLVIFGKRLTIKWGKSQG 418
           F+ Y++ NA  ++ AE+    +++ G+R+ + WGK  G
Sbjct: 450 FITYSAANAFHDYLAEE---EVLLHGRRIKVGWGKESG 484


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
 Frame = -3

Query: 437 NGVNRKDDKDLLRRMMVYPCWNQYL------DCLGRCHHPLHIYIHSRHKCHHPRT 288
           N + R  D ++ R+ M YP +N ++      DC  RC    H   H  + CH   T
Sbjct: 320 NSLFRILDMEIERQPMPYP-YNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,711
Number of Sequences: 5004
Number of extensions: 43275
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)