Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_N07
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical pr...    72   4e-13
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    28   8.8  
L09634-2|AAA27966.1|  504|Caenorhabditis elegans Proteasome regu...    28   8.8  
AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical ...    28   8.8  

>Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical
           protein T11G6.8 protein.
          Length = 408

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
 Frame = -2

Query: 744 RYYGXNDPVXEKLMGRXXAXXXFTXHXEDKXCYYLV--CW*SSLIMSLRTSLEATFTNMV 571
           RYYG NDPV EK++ R  A    +   +       +     S         L   F    
Sbjct: 204 RYYGTNDPVAEKILNRAAAAPTLSPPADTTITTLYIGNLGPSGAQQVTEKDLNDFFYQYG 263

Query: 570 KLDV*LLYLEPQCAFVQYTSRNAAEHAAEKTFNRLVIFGKRLTIKWGKSQGRQGLTEKND 391
            +    +  E  CAF+++T+R AAE AAE++FN+  I GKRLTI+WG+ Q ++     N 
Sbjct: 264 DIRCLRVLTEKGCAFIEFTTREAAERAAERSFNKTFIKGKRLTIRWGEPQAKRAADNSNY 323

Query: 390 GVPM 379
             P+
Sbjct: 324 VTPV 327



 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -1

Query: 613 VTEDELRGHFYQYGEIRCLTLV 548
           VTE +L   FYQYG+IRCL ++
Sbjct: 250 VTEKDLNDFFYQYGDIRCLRVL 271



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -2

Query: 174 LHYPSQDPARLGA 136
           ++YPSQDP RLGA
Sbjct: 390 IYYPSQDPTRLGA 402


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 356 LGRCHHPLHIYIHSRHKCHHPRTVRTISST 267
           LGR HH  H   H  HK   PRT R I++T
Sbjct: 22  LGRGHHHHH---HHHHKTKAPRTSRGIATT 48


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 546 LEPQCAFVQYTSRNAAEHAAEKTFNR 469
           +E Q  F   TSR + + AAEK FNR
Sbjct: 417 MEHQMTFTGDTSRCSVQRAAEKNFNR 442


>L09634-2|AAA27966.1|  504|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 3 protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 631 VIFPDNVTEDELRGHFYQYGEIRCLTL 551
           V FPDN + ++L  + Y  G I+ L L
Sbjct: 242 VAFPDNASNNDLARYMYYQGRIKALQL 268


>AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical
           protein C07G3.8 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 622 PDNVTEDELRGHFYQYGEIRCLTLV 548
           P N T D   G +Y Y   RC  L+
Sbjct: 101 PPNTTSDSCEGSYYFYESFRCTALI 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,640,535
Number of Sequences: 27780
Number of extensions: 251138
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)