Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_N03
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 305 6e-84
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 151 9e-38
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 136 3e-33
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 116 3e-27
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 78 2e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 77 4e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 69 6e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 27 2.3
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 3.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.1
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 5.4
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.2
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.5
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 305 bits (748), Expect = 6e-84
Identities = 143/163 (87%), Positives = 150/163 (92%)
Frame = -2
Query: 683 KEKLXYVALDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAN 504
KEKL YVALDFEQE+ T A SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E
Sbjct: 213 KEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENA 272
Query: 503 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 324
GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+AP
Sbjct: 273 GIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAP 332
Query: 323 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 195
PERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 151 bits (367), Expect = 9e-38
Identities = 70/163 (42%), Positives = 105/163 (64%)
Frame = -2
Query: 683 KEKLXYVALDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAN 504
KEK YVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G EA+
Sbjct: 218 KEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEAS 277
Query: 503 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 324
G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A
Sbjct: 278 GLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYAS 337
Query: 323 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 195
PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 338 PERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 136 bits (330), Expect = 3e-33
Identities = 71/166 (42%), Positives = 105/166 (63%), Gaps = 12/166 (7%)
Frame = -2
Query: 683 KEKLXYVALDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAN 504
KEKL YV+ D E + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E
Sbjct: 213 KEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQP 272
Query: 503 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------APST 348
G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L P+
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPAR 332
Query: 347 M---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 222
+ K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 333 LPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 116 bits (280), Expect = 3e-27
Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 11/146 (7%)
Frame = -2
Query: 626 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAN---------GIHETTYNSI 474
+SS K +E PDG G ERFR E LF PSF + G+HE Y SI
Sbjct: 273 ASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSI 332
Query: 473 MKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVW 300
+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + + +VW
Sbjct: 333 LACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVW 392
Query: 299 IGGSILASLSTFQQMWISKQEYDESG 222
GGSILASL FQ +W+SKQEYDE G
Sbjct: 393 FGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -2
Query: 503 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 324
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 323 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 198
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 77.8 bits (183), Expect = 2e-15
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Frame = -2
Query: 683 KEKLXYVALDFEQEMATXASS--SSLEKSYELPD------------------GQVITIGN 564
KE + YV+ +F+++M S LE Y LPD QV+ + N
Sbjct: 219 KESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSN 278
Query: 563 ERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 384
ERF PE LF PS + + GI E S+ +I+ L N V GG +PG R
Sbjct: 279 ERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKR 338
Query: 383 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 204
+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G +I+ R
Sbjct: 339 LSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTR 397
Query: 203 K 201
K
Sbjct: 398 K 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 76.6 bits (180), Expect = 4e-15
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 19/190 (10%)
Frame = -2
Query: 716 PPXSGKSFVTXKEKLXYVALDFEQEMATXASSSS--LEKSYELPDGQVITI--GNERFRC 549
P S K+ KE+ YV D +E + L+ + E G TI G ERF
Sbjct: 230 PDSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLA 289
Query: 548 PEALFQPSFLGME-ANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 372
PE F P + + E N + +D+RK LY N VLSGG+T++ +R+Q++
Sbjct: 290 PEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRD 349
Query: 371 ITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 234
+ + + + +I+ ++ +VW GGS+LA F +K +Y
Sbjct: 350 LKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADY 409
Query: 233 DESGPSIVHR 204
+E G SI R
Sbjct: 410 EEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.3 bits (162), Expect = 6e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -2
Query: 563 ERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 384
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 383 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 210
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 449 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 279
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 278 SLSTFQQMWISKQEYDESGPSIVHRK 201
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 302 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 201
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = -2
Query: 677 KLXYVALDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEANGI 498
K ++ D Q+ T SSL SYE + + ++ P + F+P++ G G
Sbjct: 91 KYTFIIKDCHQDWETSDEKSSL--SYEYDFTPIYSKEDQVVSIPFSEFKPTYRGRPVEGA 148
Query: 497 HETTYNSIMKCDVDIR 450
E + I + + IR
Sbjct: 149 PELDVSKITQFSIMIR 164
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 3.1
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Frame = -2
Query: 656 DFEQEMATXASSSSLEKSY--ELPDGQ-VITIGNERFRCPEALFQPSFLG-MEANGIHET 489
D E++ SS+ + +Y + + Q ++T+ NE + E L S + E+
Sbjct: 108 DDHPEISGHVSSNDKDFAYFEDKSENQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSES 167
Query: 488 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY 309
+ CD+D ++ + + T ++P AD I ++K A RKY
Sbjct: 168 DFGWNQLCDLD---PIFKSLAFTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKY 224
Query: 308 S 306
S
Sbjct: 225 S 225
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 637 PPXHPAA-PSRSLTNFPTVRSSPSETKDSVAQRLSSNPHSWVWKPTASTKPH 485
PP HPA+ SR + ++ TV+SSPS T ++L + P + T S+ P+
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT---TYRQLPNEPQNSAAYTTYSSFPN 122
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPHSWVWKPTASTKPHTTPS 473
PP +PS SL P S + + S R ++ S + KP+ P T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1576 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYS 1635
Query: 466 AT 461
T
Sbjct: 1636 PT 1637
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1656
Query: 466 AT 461
T
Sbjct: 1657 PT 1658
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1590 PSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1649
Query: 466 AT 461
T
Sbjct: 1650 PT 1651
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1670
Query: 466 AT 461
T
Sbjct: 1671 PT 1672
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1618 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1677
Query: 466 AT 461
T
Sbjct: 1678 PT 1679
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1625 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 466 AT 461
T
Sbjct: 1685 PT 1686
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1632 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 466 AT 461
T
Sbjct: 1692 PT 1693
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1639 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 466 AT 461
T
Sbjct: 1699 PT 1700
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1705
Query: 466 AT 461
T
Sbjct: 1706 PT 1707
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712
Query: 466 AT 461
T
Sbjct: 1713 PT 1714
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1660 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1719
Query: 466 AT 461
T
Sbjct: 1720 PT 1721
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1726
Query: 466 AT 461
T
Sbjct: 1727 PT 1728
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1674 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1733
Query: 466 AT 461
T
Sbjct: 1734 PT 1735
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
Query: 466 AT 461
T
Sbjct: 1741 PT 1742
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 637 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPHSWVWKPTASTKPHTTPS*S 467
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1747
Query: 466 AT 461
T
Sbjct: 1748 PT 1749
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 377 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 267
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 420 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 241
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 240 GV 235
V
Sbjct: 534 AV 535
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 628 HPAAPSRSLTNFPTVRSSPSETKDSV 551
HPA+ SLTN ++ + P+ D +
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMI 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,887
Number of Sequences: 5004
Number of extensions: 63678
Number of successful extensions: 267
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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