Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_N02
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.25 
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    28   1.3  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   4.0  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 424 LAVTMLGLRSVPSRYTLXGRSAPCTRRPERPQSPSGARSRSCSPSGKTSGST 579
           +A +M+G R+  S +     S P +       SPS + S+S S S  +S S+
Sbjct: 132 IAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSS 183


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 556 MASTTWTAPQKVTEVVLAAVYKALNDXPTCTSRGHSSS 443
           +A    TAP     +V+  +Y  L   PTC    H SS
Sbjct: 350 LARLALTAPPGAIAIVIPFIYNCLQRHPTCMQMLHRSS 387


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 580 LSSPKSYLMASTTWTAPQKVTE 515
           L SPKSYL +S T++ P+  TE
Sbjct: 146 LISPKSYLTSSKTFSYPKAPTE 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,131
Number of Sequences: 5004
Number of extensions: 39849
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)