Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_N01
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1711 + 28909297-28909329,28909725-28910204,28910300-289104...    29   3.3  

>07_03_1711 +
           28909297-28909329,28909725-28910204,28910300-28910428,
           28910511-28910567,28910669-28910761,28911278-28911483,
           28912757-28912898,28912981-28913170,28913263-28913369
          Length = 478

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 29  LEXICLSALFIILRPRSTALPSAARGCSMDPLDCRR 136
           L  + L +L ++L PRS A  SAA G    PLD  +
Sbjct: 99  LAPLALVSLVLLLMPRSPASSSAAAGRRWGPLDANK 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,166,504
Number of Sequences: 37544
Number of extensions: 110047
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)