Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_M19
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   129   4e-31
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   126   4e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    28   1.3  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.3  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  129 bits (312), Expect = 4e-31
 Identities = 64/121 (52%), Positives = 76/121 (62%)
 Frame = -3

Query: 683 AYXGXXTXGXXXNQIQXAFXEXXXLXVXDXAQDHQPIXEXSYVNIPVIXXCNTDSPXRFV 504
           A  G  T G   N I   + E   + V D   D Q I E S+VNIPVI  C+TDS    V
Sbjct: 100 AIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHV 159

Query: 503 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQA 324
           DIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+  
Sbjct: 160 DIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAK 219

Query: 323 K 321
           K
Sbjct: 220 K 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  126 bits (304), Expect = 4e-30
 Identities = 62/119 (52%), Positives = 75/119 (63%)
 Frame = -3

Query: 683 AYXGXXTXGXXXNQIQXAFXEXXXLXVXDXAQDHQPIXEXSYVNIPVIXXCNTDSPXRFV 504
           A  G  T G   N I   + E   + V D   D Q I E S+VNIPVI  C+TDS    V
Sbjct: 101 AIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHV 160

Query: 503 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
           D+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 161 DVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -3

Query: 611 LXVXDXAQDHQPIXEXSYVNIPVIXXCNTDSPXRFVDIAIPCNTKSSHSIGLMWWLLAR 435
           + + +  ++     E    ++P I   +TD+  R V   IP N  S     L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 370 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,017
Number of Sequences: 5004
Number of extensions: 38345
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)