Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_M18
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    28   1.3  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   2.3  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   5.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   7.0  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.0  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   9.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 616 RHDVCKRSV--RSRSPHPLEIPSGYSITILQDSRRSAL 509
           R DV K+SV   S S  PL++  GYS+  L+D  R AL
Sbjct: 61  RLDVAKKSVYAESESKLPLKMKKGYSVH-LKDQSRDAL 97


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 296 NGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 171
           N + RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 651 NKVTLYKTCIRPVMTYASVVFAHAARTHLKSLQVI 547
           N +T+ ++ +RPV TY S        +HL  + V+
Sbjct: 220 NDITIKESDVRPVSTYHSFALTSDNNSHLYGICVV 254


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 208 WVSSLVEPFVASDGFDEDGDRCLWCLK 288
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = -1

Query: 320 HYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGSRFRXRW* 141
           +YG+  ++  +       S SSS+ S++T   +   T   SP S S    SG+       
Sbjct: 37  NYGTLSTVFPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASD 96

Query: 140 IQRSTALARVSVSNS 96
           +  S  +   S +NS
Sbjct: 97  VSASNEIISSSTNNS 111


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +1

Query: 628 SFVESYLIAEGQF---ASTTKH--WIESSXNKRGAXAVPFLYGDGMSSLW 762
           +F++ YLI    F   A+ T H  W      K  A  +P  Y DG  SLW
Sbjct: 128 TFLKIYLIRISNFQIVATWTGHEDWPILFPFKDEALLIPVAYSDGSVSLW 177


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 299 INGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSP 180
           +NG  +HH +R  +SS   L++ GS +E +  H P +  P
Sbjct: 664 VNGNSQHHHNRDDASS--GLSSNGSENE-SLEHEPTNELP 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,682
Number of Sequences: 5004
Number of extensions: 57889
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)