Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_M18
         (785 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha prot...    34   0.51 
CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.                34   0.51 
BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directe...    34   0.51 
BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directe...    34   0.51 
AL662844-15|CAM25639.1|  871|Homo sapiens coiled-coil alpha-heli...    30   8.2  
AL662844-14|CAM25638.1|  216|Homo sapiens coiled-coil alpha-heli...    30   8.2  

>L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha
           protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 655 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 545
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 655 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 545
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 655 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 545
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 655 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 545
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>AL662844-15|CAM25639.1|  871|Homo sapiens coiled-coil alpha-helical
           rod protein 1 protein.
          Length = 871

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +3

Query: 288 STVNGSGGSVMACFGDVDGLPFGLLGRVCNFQRLR*EGSHVVPP 419
           ST+ G    VMAC+  +DGLP GL        R R    H VPP
Sbjct: 13  STLTGKDPRVMACWC-LDGLPSGLAEPWRELWRWRSRPLHCVPP 55


>AL662844-14|CAM25638.1|  216|Homo sapiens coiled-coil alpha-helical
           rod protein 1 protein.
          Length = 216

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +3

Query: 288 STVNGSGGSVMACFGDVDGLPFGLLGRVCNFQRLR*EGSHVVPP 419
           ST+ G    VMAC+  +DGLP GL        R R    H VPP
Sbjct: 13  STLTGKDPRVMACWC-LDGLPSGLAEPWRELWRWRSRPLHCVPP 55


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,636,877
Number of Sequences: 237096
Number of extensions: 2412945
Number of successful extensions: 5848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5848
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)