Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_M18
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 12  FFLPMLIALRGYFSFILTLVGELAGLNRRVANTDPSKSSAS 134
           F++PML+ L  Y+      V     +N+    T  SK   S
Sbjct: 256 FYIPMLVMLFFYWRIYNAAVSTTKAINQGFRTTKSSKMFGS 296


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 370 TRPSRPNGKPSTSPKHAITDP 308
           TRPSR N  PS+   +   DP
Sbjct: 17  TRPSRGNAVPSSQRGNVHNDP 37


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 370 TRPSRPNGKPSTSPKHAITDP 308
           TRPSR N  PS+   +   DP
Sbjct: 17  TRPSRGNAVPSSQRGNVHNDP 37


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 367 GYVISSGYDERVLMSCRLLKMAQRC 441
           GY  +S +D +V+ + ++LKM   C
Sbjct: 210 GYTNNSKWDFKVIKATKVLKMYACC 234


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -2

Query: 397 SHRSRWKLHTRPSRPNGKPSTSPKHAITDPPDPLTV-LLGT 278
           SHR  W   T  S     P+      ++  P P ++ + GT
Sbjct: 24  SHRPAWWFWTATSHEASAPAEGKFKTVSKVPGPFSLPIFGT 64


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 72  GELAGLNRRVANTDPSKSSASLNLPPXSETRPTEK 176
           GE        A T    ++ ++N+PP     PT+K
Sbjct: 654 GEYVCTAENAAGTASHSTTLTVNVPPRWILEPTDK 688


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 373 VISSGYDERVLMSCRLLKMAQRCRL*ILTKRVELQVVVEIHIPKEPRR 516
           ++ +G   R+L   +LL + +  RL  L + V     V I + ++P R
Sbjct: 198 ILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPER 245


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 376 LHTRPSRPNGKPSTSPKHAITDPPDPL 296
           L  RPS P   P    K A   PPD L
Sbjct: 11  LFDRPSEPVYVPKGDNKVAFDIPPDYL 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,658
Number of Sequences: 438
Number of extensions: 4058
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)