Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_M13
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.5  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   10.0 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   10.0 

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/51 (27%), Positives = 16/51 (31%)
 Frame = +3

Query: 603  PXXPXPXEAXXPXPPXPXXPXRPXPXXVPXXRXYXXAPXXPPXXSLSXXAP 755
            P    P +   P PP P     P P   P       AP  P   S +   P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 320 RSLISNLSNTCDLTPLPEWSCEQSAW 243
           RS+   L    D+TP+ +W  ++S W
Sbjct: 110 RSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
 Frame = +3

Query: 579  LPXXXXXXPXXPXPXEAXXPXPPXPXXPXRPXP-XXVPXXRXYXXAPXXP-PXXSLSXXA 752
            +P      P  P P     P PP    P  P P   VP       AP  P P   L    
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230

Query: 753  PXLLXARPLXA 785
                 A P+ A
Sbjct: 1231 VPTAKAPPVPA 1241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,079
Number of Sequences: 5004
Number of extensions: 14361
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)