Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_M13
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   4.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   5.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   5.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   5.4  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/58 (32%), Positives = 21/58 (36%)
 Frame = +3

Query: 627 AXXPXPPXPXXPXRPXPXXVPXXRXYXXAPXXPPXXSLSXXAPXLLXARPLXAXPXLP 800
           A  P PP P  P +P P      +    AP  PP       AP    A P  A P  P
Sbjct: 21  ATTPQPPPPPPPPKPAPYVEQSAQPQQTAPPPPP-------APYPQQAVPAPAPPPAP 71


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/83 (30%), Positives = 25/83 (30%)
 Frame = +1

Query: 406 RQXAXXGSPPPXXXXXGXXPXPXPXXXXXXXXXXXXSXHHPRAXXTXRGPXPXXTXAGSP 585
           RQ    GSPPP     G  P                S   PR       P P  T  GSP
Sbjct: 229 RQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAG--SPPPPRTG----SPPPPPT--GSP 280

Query: 586 SXPXXXXXXXXPXRRRPPXPXPP 654
             P        P    PP P PP
Sbjct: 281 PPPPAGGSPPPPRAGSPPPPPPP 303


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/83 (30%), Positives = 25/83 (30%)
 Frame = +1

Query: 406 RQXAXXGSPPPXXXXXGXXPXPXPXXXXXXXXXXXXSXHHPRAXXTXRGPXPXXTXAGSP 585
           RQ    GSPPP     G  P                S   PR       P P  T  GSP
Sbjct: 250 RQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAG--SPPPPRTG----SPPPPPT--GSP 301

Query: 586 SXPXXXXXXXXPXRRRPPXPXPP 654
             P        P    PP P PP
Sbjct: 302 PPPPAGGSPPPPRAGSPPPPPPP 324


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/83 (30%), Positives = 25/83 (30%)
 Frame = +1

Query: 406 RQXAXXGSPPPXXXXXGXXPXPXPXXXXXXXXXXXXSXHHPRAXXTXRGPXPXXTXAGSP 585
           RQ    GSPPP     G  P                S   PR       P P  T  GSP
Sbjct: 235 RQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAG--SPPPPRTG----SPPPPPT--GSP 286

Query: 586 SXPXXXXXXXXPXRRRPPXPXPP 654
             P        P    PP P PP
Sbjct: 287 PPPPAGGSPPPPRAGSPPPPPPP 309


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/75 (29%), Positives = 22/75 (29%)
 Frame = -1

Query: 653 GGXGXGGRRLXGXXXXXXXXGXXGEPAXVXXGXGPRXVXCARG*WXEGGRRXXXEGGGXG 474
           GG G GG             G  G       G  P    C  G    GG      GGG G
Sbjct: 40  GGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG-CGGGGGGCGGGGGGCG 98

Query: 473 XGXGXXPXHXXXGGG 429
            G G        GGG
Sbjct: 99  GGGGCGGGGGGCGGG 113


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/75 (29%), Positives = 22/75 (29%)
 Frame = -1

Query: 653 GGXGXGGRRLXGXXXXXXXXGXXGEPAXVXXGXGPRXVXCARG*WXEGGRRXXXEGGGXG 474
           GG G GG             G  G       G  P    C  G    GG      GGG G
Sbjct: 40  GGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG-CGGGGGGCGGGGGGCG 98

Query: 473 XGXGXXPXHXXXGGG 429
            G G        GGG
Sbjct: 99  GGGGCGGGGGGCGGG 113


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 24/78 (30%), Positives = 24/78 (30%)
 Frame = -1

Query: 662 RXXGGXGXGGRRLXGXXXXXXXXGXXGEPAXVXXGXGPRXVXCARG*WXEGGRRXXXEGG 483
           R  GG G GG R  G           G       G G       RG    GG      GG
Sbjct: 57  RGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGG-------RGGGGGGGGGRGGGGG 109

Query: 482 GXGXGXGXXPXHXXXGGG 429
           G G G G        GGG
Sbjct: 110 GRGGGGGGGGGRGGGGGG 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,971,485
Number of Sequences: 27780
Number of extensions: 114791
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)