Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_M08
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 32 0.57
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 31 1.3
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.3
07_03_0846 - 21983581-21986055 29 3.0
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.0
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321... 29 3.0
03_05_0183 - 21681673-21682524 29 4.0
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 4.0
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 9.3
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.3
02_05_0290 - 27571504-27572119,27572211-27572279,27573205-275733... 28 9.3
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 75 PSTTPRQERKSSTDYSGPRHRTELYPDLRSRDARVKKKTDSID 203
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/85 (27%), Positives = 30/85 (35%)
Frame = +3
Query: 48 NRSQHDAALPSTTPRQERKSSTDYSGPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLR 227
+RS+ A R +S D GP HR P R R K D R P+
Sbjct: 501 SRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAPA 560
Query: 228 RRVSRFECETRLVKSHCLEPPDSRG 302
++ S R S P S+G
Sbjct: 561 KKGSSKYNRRRSSSSRSSSPAGSKG 585
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 343 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 209
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 201 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 350
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 430 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 332
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>02_01_0444 +
3212646-3212686,3213093-3213225,3213467-3213570,
3214360-3214504,3214592-3214732,3214835-3216298
Length = 675
Score = 29.5 bits (63), Expect = 3.0
Identities = 29/107 (27%), Positives = 45/107 (42%)
Frame = +3
Query: 45 LNRSQHDAALPSTTPRQERKSSTDYSGPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGL 224
++R +H S TPR D G R E+ P + V +DS +L G+
Sbjct: 581 IDREEHKTRTKSRTPRPRADQPADGVGERSNREVAPQ-HPPERTVSLPSDSGNL----GV 635
Query: 225 RRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFR 365
+ + +S ++P SRG V S+PD LA+ + A R
Sbjct: 636 KPKAP--------ARSISMQPDKSRG-IVHPSMPDFDELAARISALR 673
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 642 SQAFIATLLFDPSMSALPIIAKQNSPS 562
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 703 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 596
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 21 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSGPRHRTELYPDLRSRDARVKKKTDSI 200
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 201 D 203
+
Sbjct: 791 E 791
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 352 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 179
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 178 TRASR 164
TRA+R
Sbjct: 64 TRAAR 68
>02_05_0290 -
27571504-27572119,27572211-27572279,27573205-27573332,
27573854-27573976
Length = 311
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 33 AGLSLNRSQHDAALPSTTPRQE-RKSSTDYSGPRHRTELYPD 155
A L+ RS H AA PS+T R R S+T SG R +L+ D
Sbjct: 173 ASLASCRS-HSAASPSSTQRSRGRSSTTCSSGKRQLPQLWRD 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,459,898
Number of Sequences: 37544
Number of extensions: 470241
Number of successful extensions: 1327
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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