Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_M07
         (940 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           34   0.19 
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    30   2.3  
09_01_0037 - 604001-604957                                             30   3.1  
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    29   4.0  
03_01_0515 - 3864796-3865425                                           29   5.3  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   7.1  
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365...    29   7.1  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 434 PXXPDSGPSVXXLPPXAXSPXLXAXGXPXPHPPPXSXPA 550
           P  P + P+    PP A SP     G   P PPP + PA
Sbjct: 321 PPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPA 359


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 428 TXPXXPDSGPSVXXLPPXAXSPXLXAXGXPXPHPPP 535
           T P  P S P V   P  + +P     G P P PPP
Sbjct: 55  TLPPPPMSTPPVVAPPMHSFAPSFRPLGAPPPPPPP 90


>09_01_0037 - 604001-604957
          Length = 318

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = +2

Query: 434 PXXPDSGPSVXXLPPXAXSPXLXAXGXPXPHPPPXSXPATXXXXSSS 574
           P    S P    LP     P   A G   P PPP   PAT    S S
Sbjct: 163 PSQMPSSPPHLLLPQHVYRPVARAGGVVVPPPPPPPPPATSLSLSLS 209


>06_01_0456 -
           3249662-3249710,3249838-3250451,3250694-3250780,
           3251509-3252384,3252445-3252534,3252645-3252696,
           3253117-3253168,3253265-3253363,3253444-3253528,
           3253620-3253668,3253749-3253816,3254417-3254482,
           3255690-3255741,3256685-3256767,3256915-3256946,
           3257271-3257466,3258542-3258607,3259797-3259869,
           3260010-3260224
          Length = 967

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 455 PSVXXLPPXAXSPXLXAXGXPXPHPPP 535
           P++   PP A SP L A   P   PPP
Sbjct: 861 PTISQAPPRAQSPFLPATARPPSTPPP 887


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 434 PXXPDSGPSVXXLPPXAXSPXLXAXGXPXPHPPPXSXPA 550
           P  P +GP    +PP    P + +   P P PPP   PA
Sbjct: 61  PPPPAAGP---LMPPPPPPPSVTSSPPPPPLPPPPPPPA 96


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +2

Query: 428  TXPXXPDSGPSVXXLPPXAXSPXLXAXGXPXPHPPP 535
            T P  P   PS   LPP    P L +   P P PPP
Sbjct: 1168 TPPPPPPLSPS---LPPPPPPPPLPSGPPPQPAPPP 1200


>05_01_0004 -
           34967-35149,35340-35501,36078-36225,36309-36385,
           36507-36577,36850-37263,37518-38268
          Length = 601

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = +2

Query: 443 PDSGPSVXXLPPXAXSPXLXAXGXPXPHPPPXSXPATXXXXSSSXXXXLP 592
           P S P      P A  P   +   P P PPP + P+     S +    LP
Sbjct: 56  PTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLP 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,717,598
Number of Sequences: 37544
Number of extensions: 189578
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)