Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_M06
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1310 + 29238644-29240260 35 0.064
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.2
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.5
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.5
08_02_1615 + 28257275-28258428,28258523-28259144 28 7.3
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 28 7.3
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.7
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 9.7
>06_03_1310 + 29238644-29240260
Length = 538
Score = 35.1 bits (77), Expect = 0.064
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 669 HQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPS-SLGMXKGVSP 493
H+ P H PP+ P P P +P P PP SE+P + + PS S G SP
Sbjct: 381 HRSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASP 438
Query: 492 P 490
P
Sbjct: 439 P 439
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 80 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 72 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 239 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -3
Query: 678 QPDHQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 499
QP H H PQ+ HP P P AP PP S P ++ + L K +
Sbjct: 32 QPPHSHLLHHHHSPQS-HPQPDAPAAAAPPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPL 90
Query: 498 SP 493
P
Sbjct: 91 PP 92
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -3
Query: 624 PFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLT--PSSLGMXKGVSPP 490
P P P P APG P S P+ Y T P G G PP
Sbjct: 158 PLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPP 204
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/69 (28%), Positives = 27/69 (39%)
Frame = -3
Query: 642 PPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQ 463
PP P P P P P PP+ AP +++ +SP ++ES
Sbjct: 353 PPPPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPPKATMARFPKLSPTESSRSEESS 412
Query: 462 ASRLISRHS 436
AS L S S
Sbjct: 413 ASELASESS 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,830,280
Number of Sequences: 37544
Number of extensions: 432675
Number of successful extensions: 1267
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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