Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_M03
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798 33 0.20
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 31 1.1
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 29 4.3
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135... 29 4.3
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 28 7.5
01_06_0475 + 29610268-29610711 28 7.5
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 28 9.9
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 28 9.9
>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
Length = 333
Score = 33.5 bits (73), Expect = 0.20
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -1
Query: 551 LTGHDDFRCVNFSSPRK-LACFLVCLL--AGARSHRTCSVIGTTSIKRHDTRTLSSWPPV 381
+ G D + +FSS + C ++C G + ++ S+ TT+ HDT T +S PP+
Sbjct: 142 MEGVHDQQASSFSSKEDWVLCRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPL 201
Query: 380 TTFPILRTEWKAVDVAQNTSS 318
P++ T + + NTSS
Sbjct: 202 P--PLMDTTLAQLQASMNTSS 220
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 31.1 bits (67), Expect = 1.1
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -2
Query: 304 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARL 125
S NG R P SS +L +G L+L S F P SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGGMSVSLAS 256
Query: 124 LLGFVLATS-SGLSPVSSPTKVRV 56
G V+ +GL +SP ++ V
Sbjct: 257 PDGRVVGGGVAGLLVAASPVQIVV 280
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 244 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 74
L TKG +T+ H P+ FSP S G E+ L + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259
>05_07_0278 +
28911722-28911934,28912154-28913055,28913142-28913581,
28913628-28913955,28914101-28914743
Length = 841
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = -3
Query: 678 RXXNRRTXGQARTSTDFTGKTCIRQRNPDTAASPDTNAPDVLSYRSRRLQMCQFFFPTET 499
R R G+AR G+ R++ D AAS A D L R +R +C FP +
Sbjct: 376 RGRGRGNAGRARR-LKLLGRRA-REQLGDAAASAARVAMDSLDTRLKRCLLCFVVFPDDA 433
Query: 498 CLLSCLLACW 469
+ LL W
Sbjct: 434 AIKRRLLIHW 443
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -1
Query: 500 LACFLVCLLAGARSHRTCSVIGTTSIKR----HDTRTLSSWPPVTTFPILRTEWKAVDVA 333
L+C ++ LLAGA H ++ T +KR H+ T++ P T + + ++V
Sbjct: 13 LSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVREGDTVVINVV 72
Query: 332 QNTSSRILL 306
+ + +
Sbjct: 73 NHAQYNVTI 81
>01_06_0475 + 29610268-29610711
Length = 147
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 268 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 179
SP SS+P S+++ TL HSP S SPD
Sbjct: 54 SPMSSSPP---SRSSTRATLTHSPSSASPD 80
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 528 SEVVVTCKIRRPVRS--CLAMRRC 593
S++ +TCKI RPVRS C RC
Sbjct: 398 SQLCITCKIVRPVRSKHCSTCDRC 421
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 528 SEVVVTCKIRRPVRS--CLAMRRC 593
S++ +TCKI RPVRS C RC
Sbjct: 363 SQLCITCKIVRPVRSKHCSTCDRC 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,323,540
Number of Sequences: 37544
Number of extensions: 396427
Number of successful extensions: 1154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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