Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_M01
(955 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.32
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.73
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 9.0
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.32
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Frame = +1
Query: 373 PPXTPTXXLXLPPPTP---PPXXSXXPXXPXXXXPXGXPXLPXXRXXTPPXXXALXXXXX 543
PP + +PPP+P PP S P P P P P + P +
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 544 PXXXP 558
P P
Sbjct: 199 PKVPP 203
Score = 29.9 bits (64), Expect = 0.55
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = +1
Query: 349 AXPTXLXAPPXTPTXXLXLPPPTPPPXXSXXPXXPXXXXPXGXPXLPXXRXXTPPXXXAL 528
A P APP TP L PP + PP S P P P P PP A
Sbjct: 122 AAPPSAPAPP-TPQSELR-PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179
Query: 529 XXXXXP 546
P
Sbjct: 180 PVKSPP 185
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.73
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 349 AXPTXLXAPPXTPTXXLXLPPPTPPPXXSXXPXXPXXXXP-XGXPXLP 489
A P + AP P PPP+ PP + P P P P +P
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.2
Identities = 23/81 (28%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Frame = +1
Query: 355 PTXLXAPPXTPTXXLXLPP-PTP---PPXXSXXPXXPXXXXPXGXPXLPXXRXXTPPXXX 522
P APP P + PP P P PP P P G P +P PP
Sbjct: 1115 PAPSGAPP-VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP-VP 1172
Query: 523 ALXXXXXPXXXPXXATLXXPP 585
A P P PP
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPP 1193
Score = 27.1 bits (57), Expect = 3.9
Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Frame = +1
Query: 355 PTXLXAPPX-TPTXXLXLPPPT--PPPXXSXXPXXPXXXXPXGXPXLPXXRXXTPPXXXA 525
P APP P+ +P P+ PP P P G P +P PP
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Query: 526 LXXXXXP----XXXPXXATLXXPPLXRHSAA 606
P P A PP+ + S A
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVA 1167
Score = 26.6 bits (56), Expect = 5.1
Identities = 24/95 (25%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Frame = +1
Query: 355 PTXLXAPPXT-PTXXLXLP------PPTPPPXXSXXPXXPXXXXPXGXPXLPXXRXXTPP 513
P APP PT +P P PPP + P P G P +P P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094
Query: 514 XXXALXXXXXP----XXXPXXATLXXPPLXRHSAA 606
++ P P A PP+ + S A
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVA 1129
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = +1
Query: 355 PTXLXAPPXTPTXXLXLPPPTPPPXXSXXPXXPXXXXP 468
P + PP P PPP PP P P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 406 PPPTPPPXXSXXPXXPXXXXPXG 474
PPP PPP P P P G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 9.0
Identities = 19/80 (23%), Positives = 22/80 (27%), Gaps = 2/80 (2%)
Frame = +3
Query: 324 PXSXGAAXRXXXXPPRPTXXXYTXXXPPPSHASXXXXPXXXXPXAXXPXRP--XXPPXPX 497
P S A PP PP +AS P P + P P P P
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Query: 498 XQXXPXXXCPXXPPXXXLXP 557
P PP + P
Sbjct: 438 SLPMGAPAAPPLPPSAPIAP 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,828
Number of Sequences: 5004
Number of extensions: 15058
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -