Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_L22
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   4.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   5.4  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   9.4  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   9.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.4  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   9.4  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 142 YHRNRKRDPLRRSGEKLSGLCLWVNSLVEPFVASDGFGEDGD 267
           Y   +K   +   G  L  +  ++ +L   +V SD FGEDGD
Sbjct: 469 YKYAKKLYSILNGGSTLRNVNDYLAALNPGYVTSDDFGEDGD 510


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 475  ELDPVSKYLQS----ASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRR 332
            +L P SK  Q+    A + ++  AA  +N + ++  N+I    +RL+NRR +
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNRRTK 1297


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 347 KPSTSPKARHHGSS*STNGAFRQYKHRSPSSPNPSLATKGSTSELTHRHSPLS 189
           KPS    +R  G S +   A  +   +S S P  ++ +   T +++ +HSP+S
Sbjct: 24  KPSPPLPSRRKGKS-ALRSALEKKNRKSKSKPKVTITS--DTPKVSSQHSPVS 73


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
 Frame = -2

Query: 392 RGRRKLHTRSCRPFGK-----PSTSPKARHHGSS*STNGAFRQYKHRSP 261
           R    LH  S +P G      P+ S  +   G   S  G+F    HRSP
Sbjct: 128 RTENALHAASPKPSGSTGYTSPALSQNSGSGGEGESDEGSFNTQHHRSP 176


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 328 KHVITDPPDPLTVLLGNTSTGH 263
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 344 PSTSPKARHHGSS*STNGAFRQYKHRSPSSPNPSLATKGSTSE 216
           PST+    HH  S S++ A       SP+S  P  +   S SE
Sbjct: 113 PSTAASQHHHHHSSSSSYAVSPTSPTSPTSSGPIGSNFDSASE 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,023
Number of Sequences: 5004
Number of extensions: 58987
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)