Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_L22
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119...    38   0.009
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    32   0.60 
02_05_1245 + 35223504-35224778                                         30   2.4  
09_02_0283 + 6819086-6820270                                           29   4.2  
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654...    29   5.6  
04_02_0030 + 8819935-8820000,8820059-8820363,8820636-8820937,882...    28   7.4  
08_01_0683 + 5991905-5992055,5993262-5993451,5993701-5993772,599...    28   9.8  
04_01_0527 - 6913266-6913802                                           28   9.8  

>03_03_0042 +
           14009649-14009866,14011342-14011419,14011791-14011955,
           14012071-14012138,14012219-14012258,14013579-14013690,
           14013859-14013942
          Length = 254

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 341 STSPKARHHGSS*STNGAFRQYK-HRSPSSPNPSLATKGSTSELTHRHSPLSFSPDLL 171
           S SP++R+H  S S + A R Y+ HR   SP  SL+  G   +  HR +  S SPD L
Sbjct: 168 SRSPRSRYHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQ-DKRHHRSNGRSASPDEL 224


>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 463 VSKYLQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPKHVITDPP 305
           VS Y +S S+  F+ +AR   P+V ++ NY+         +RRR +  +T  P
Sbjct: 53  VSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIECFLTSDP 105


>02_05_1245 + 35223504-35224778
          Length = 424

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/74 (28%), Positives = 29/74 (39%)
 Frame = -2

Query: 395 CRGRRKLHTRSCRPFGKPSTSPKARHHGSS*STNGAFRQYKHRSPSSPNPSLATKGSTSE 216
           C+ +  + T S       +T+P+   H    S      QY   S SS  PS AT  S+S 
Sbjct: 29  CKTKSSVATASMAASASTATTPRKHQHQHQRSPRATATQYSTTSSSSA-PSTATATSSST 87

Query: 215 LTHRHSPLSFSPDL 174
                +     PDL
Sbjct: 88  AASLQALRDSLPDL 101


>09_02_0283 + 6819086-6820270
          Length = 394

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 235 VASDGFGEDGDRCLYCLKAPLVDQEDP**RALGD 336
           VA D  G D D  +  LKAP V + DP   A+GD
Sbjct: 117 VARDALGMDDDALVVALKAPGVWRVDPVLAAVGD 150


>03_05_0822 -
           27963849-27964544,27965043-27965091,27965372-27965480,
           27965979-27966006,27966086-27966276,27966418-27966532,
           27966955-27967206
          Length = 479

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 290 AFRQYKHRSPSSPNPSLATKGSTSE 216
           A +  K + PS PNPS+ +K S+S+
Sbjct: 319 ATKSQKKKRPSGPNPSIKSKASSSD 343


>04_02_0030 +
           8819935-8820000,8820059-8820363,8820636-8820937,
           8821938-8822014,8822519-8822869
          Length = 366

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 243 ACDEGLDERINPQTQPTEFLAGSSQWVALPIPVVDSAKHCS 121
           +C      R+ PQ  P   L  + QW  +    V++ K+CS
Sbjct: 44  SCSMYTIRRVRPQLLPFSLLGRAEQWFYINRATVNTRKYCS 84


>08_01_0683 +
           5991905-5992055,5993262-5993451,5993701-5993772,
           5994016-5994084,5994189-5994260,5994440-5994511,
           5994623-5994694,5994777-5994848,5995276-5995347,
           5995452-5995526,5995929-5996005,5996417-5996781,
           5996872-5997070,5997151-5997309,5997391-5997509,
           5997624-5997641,5997701-5997851,5997959-5998190,
           5998272-5998422,5998517-5998876
          Length = 915

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 311 SS*STNGAFRQYKHRSPSSPNPSL 240
           SS ST G FR+ +  SP +P+P++
Sbjct: 884 SSGSTTGEFREQRETSPLTPSPTI 907


>04_01_0527 - 6913266-6913802
          Length = 178

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 392 RGRRKLHTRSCRPFGKPSTSPK 327
           R RR+ H R CRP   P  SP+
Sbjct: 100 RRRRRAHRRQCRPSPPPPLSPE 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,067,900
Number of Sequences: 37544
Number of extensions: 474433
Number of successful extensions: 1355
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)