Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_L18
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 33 0.26
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 32 0.45
11_03_0047 - 9311913-9312659 30 2.4
03_06_0613 - 35090377-35090478,35090686-35090839,35090925-350910... 30 2.4
03_01_0168 + 1382531-1383931,1384028-1384150 29 4.2
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 29 5.5
03_02_0137 + 5832608-5833590,5833680-5833731,5833827-5833904,583... 29 5.5
01_05_0809 - 25422832-25422919,25423887-25424443 29 5.5
01_01_0854 + 6662533-6662652,6662727-6662996,6663118-6663171,666... 29 5.5
08_02_0847 - 21828372-21828545,21829043-21829206,21829831-218299... 28 7.3
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 9.7
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 28 9.7
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 28 9.7
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 33.1 bits (72), Expect = 0.26
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -3
Query: 358 PATTIPASSQIKARH*Q--SSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQP 185
P +P S+I AR + S+ A D SRL LP +K +SS+ ++ S P
Sbjct: 624 PVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILPVKITKK--SSSKGSAGSMP 681
Query: 184 TTGSSTLGVTHPRRGSS 134
GSS L V+ GSS
Sbjct: 682 KQGSSDLIVSDNGGGSS 698
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 292 PASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPTTGSST 167
PA QP Q + ++ + PT+ ++S R + SS+P +ST
Sbjct: 143 PAPQPVQPQQQLVSPVAAPTSSSSSSSDRSSGSSKPARATST 184
>11_03_0047 - 9311913-9312659
Length = 248
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 265 RSRLTALPGPTARKFTASSRRNSSSQPTTGSSTLGVTH 152
R ++ P P T+SS +S S PTTGS G+ H
Sbjct: 44 RELASSSPEPCRGLITSSSSSSSPSSPTTGSFCDGIDH 81
>03_06_0613 -
35090377-35090478,35090686-35090839,35090925-35091004,
35091191-35091340,35091920-35092045,35096500-35096916
Length = 342
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -3
Query: 376 TSASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNS 197
+SAS +PA A+S + + A+ + L T ++SS R S
Sbjct: 40 SSASSSPAPAPAAASTLLLPPRLLAPPPAAAASHGGCDTGANILASTTTPSPSSSSHRRS 99
Query: 196 SSQPTTGSSTLGVTHPRRGSSAH 128
S T S L T PRRG SA+
Sbjct: 100 MSARFTASLVLPFTRPRRGRSAN 122
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 217 ASSRRNSSSQPTTGSSTLGVTHPRRGSSAHMDYWRHAR 104
A +RRN SS P+ ++ G+ H G +A + W+ R
Sbjct: 65 AGNRRNDSSPPSDDAAPTGLGHIVFGIAASSELWKSRR 102
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 28.7 bits (61), Expect = 5.5
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -3
Query: 355 ATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQP--T 182
ATT ASS+ +AR ++ A+ P +R P AR + RRN P T
Sbjct: 135 ATTGSASSRRRARRAAAAVRHSAATPSSTPPTREDLRGEPDAR-ISIERRRNGRRAPHAT 193
Query: 181 TGSSTLGVT-HPRRG 140
G+S+ GV+ H RG
Sbjct: 194 EGASSSGVSPHHGRG 208
>03_02_0137 +
5832608-5833590,5833680-5833731,5833827-5833904,
5835228-5835347,5835618-5835716,5835821-5835975,
5836117-5836257,5836395-5836503
Length = 578
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -3
Query: 376 TSASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTA---LPGPTARKFTASSR 206
T+ +RTP A++ +A + SKPAS+ + H S A +P A A
Sbjct: 5 TATARTPTKAAAAAAGGRAAGNTTPSSKPASRARLSHASSENAHPNIPAAAAAAAAAGEA 64
Query: 205 RNSSSQPT 182
S PT
Sbjct: 65 GTPSKNPT 72
>01_05_0809 - 25422832-25422919,25423887-25424443
Length = 214
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Frame = -3
Query: 343 PASSQIKARH*QSSHSKPASQPQQD---HRSRLTALPGPTARKFTASSRRNSSSQPTTGS 173
P+S Q R H P+ HRSRL LP PTA T R + T S
Sbjct: 77 PSSQQRDGRRHHRHHGGVGGSPRYRLWLHRSRLEPLPTPTAAADTEEQRLRLENAVQTNS 136
>01_01_0854 +
6662533-6662652,6662727-6662996,6663118-6663171,
6663723-6663784,6663940-6664008,6664082-6664133,
6664287-6664460
Length = 266
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 228 ANSLPHHAATVHRSPRPDHQRLGSHIPG 145
A+SLPHH AT P P + +PG
Sbjct: 11 ASSLPHHRATTRAPPTPPRIPRRARLPG 38
>08_02_0847 -
21828372-21828545,21829043-21829206,21829831-21829967,
21830909-21831241,21832067-21833244
Length = 661
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -1
Query: 198 VHRSPRPDHQRLGSHIPGVAALHTWTTGDTHAAFKLSLDSPQASSSTGPCKLISA 34
+H + R H L SH+ A H + AF L++ P +++T PC L ++
Sbjct: 43 LHAALRSLHLSLSSHLAPFLASHLFHRD----AFALTIPPPDHTAATSPCALCAS 93
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 335 LADKSTSLTVVPQQASIA-ASTGPSQPTHRASW 240
LAD T P+ SI AST PSQ H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 298 SKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPTTGSSTL 164
S SQPQQ H ++P PT +A ++S P S +
Sbjct: 393 SSGGSQPQQTHPITKPSVPAPTVSGVSAGVSNSASQWPKVTQSDI 437
>01_06_1473 - 37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 178 GSSTLGVTHPRRGSSAHMDYWRHAR 104
GSS+ V++P G+ A +++WR R
Sbjct: 1403 GSSSGNVSNPNEGNDASINFWRRMR 1427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,378,850
Number of Sequences: 37544
Number of extensions: 399302
Number of successful extensions: 1592
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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