Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_L18
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 34 0.13
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 32 0.53
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 32 0.53
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical ... 31 1.2
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 31 1.2
AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical... 30 1.6
Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical pr... 30 2.2
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 2.9
AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 29 3.8
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 8.7
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 28 8.7
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 28 8.7
U40941-6|AAA81711.2| 435|Caenorhabditis elegans Jnk kinase prot... 28 8.7
U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1 dual-specif... 28 8.7
AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek (dictyo... 28 8.7
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 28 8.7
AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl... 28 8.7
AB024086-1|BAA82641.1| 435|Caenorhabditis elegans JKK-1 protein. 28 8.7
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 33.9 bits (74), Expect = 0.13
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = -3
Query: 376 TSASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNS 197
T S T + +SSQ+ + S S S +T P P + + TAS + +S
Sbjct: 679 TQVSSTTSPVASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQP-PASSRSTAS-QGSS 736
Query: 196 SSQPTTGSSTLGVT 155
S+QP SST+G T
Sbjct: 737 SAQPIASSSTMGST 750
Score = 31.9 bits (69), Expect = 0.53
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -3
Query: 379 LTSASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTA-SSRR 203
+ S + T PASS+ A SS ++P + + ++ P PTA + SS
Sbjct: 712 VNQGSSSVTTQPPASSRSTASQ-GSSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSSTG 770
Query: 202 NSSSQPTTGSSTLGVTHPRRGSS 134
+SS T GSST+G T SS
Sbjct: 771 ATSSGSTVGSSTMGSTQSSLPSS 793
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -3
Query: 298 SKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPT---TGSSTLGVTHPRRGSS 134
S AS Q S TA PG + T +S + SSS T TGS+T+ T +GSS
Sbjct: 925 STSASSSTQPIASSTTANPGSSTSGPTIASTQGSSSTQTNSNTGSTTVATT-VTQGSS 981
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = -3
Query: 361 TPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPT 182
T +T+P+ S + + SS S + P S LT+ P P++ + + + ++ P
Sbjct: 457 TSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPN 516
Query: 181 TGSSTLGVTHPRRGSS 134
ST + G++
Sbjct: 517 PSQSTSSLESSTSGAT 532
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -3
Query: 379 LTSASRTPATTIPASSQIKARH*QS-SHSKPA--SQPQQDHRSRLTALPGPTARKFTASS 209
++ ++ + AT +P SS QS S S P S S +T +PG + +SS
Sbjct: 268 ISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSS 327
Query: 208 RRNSSSQPTTGSS 170
SSS +TGS+
Sbjct: 328 PNPSSSPASTGST 340
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = -3
Query: 361 TPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPT 182
T +T+P+ S + + SS S + P S LT+ P P++ + + + ++ P
Sbjct: 664 TSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPN 723
Query: 181 TGSSTLGVTHPRRGSS 134
ST + G++
Sbjct: 724 PSQSTSSLESSTSGAT 739
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -3
Query: 379 LTSASRTPATTIPASSQIKARH*QS-SHSKPA--SQPQQDHRSRLTALPGPTARKFTASS 209
++ ++ + AT +P SS QS S S P S S +T +PG + +SS
Sbjct: 475 ISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSS 534
Query: 208 RRNSSSQPTTGSS 170
SSS +TGS+
Sbjct: 535 PNPSSSPASTGST 547
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = -3
Query: 361 TPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPT 182
T +T+P+ S + + SS S + P S LT+ P P++ + + + ++ P
Sbjct: 664 TSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPN 723
Query: 181 TGSSTLGVTHPRRGSS 134
ST + G++
Sbjct: 724 PSQSTSSLESSTSGAT 739
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -3
Query: 379 LTSASRTPATTIPASSQIKARH*QS-SHSKPA--SQPQQDHRSRLTALPGPTARKFTASS 209
++ ++ + AT +P SS QS S S P S S +T +PG + +SS
Sbjct: 475 ISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSS 534
Query: 208 RRNSSSQPTTGSS 170
SSS +TGS+
Sbjct: 535 PNPSSSPASTGST 547
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -3
Query: 235 TARKFTASSRRNSSSQPTTGSSTLGVTHPRRGSSAHMDYWRHARSIQAQPRL 80
T R+F +R S++ T+ + T VT RR SSAH H++ A+P +
Sbjct: 232 TRRRFADLRKRVSTTTKTSVTETENVTTTRRSSSAHS---THSKRSSAKPEV 280
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -3
Query: 235 TARKFTASSRRNSSSQPTTGSSTLGVTHPRRGSSAHMDYWRHARSIQAQPRL 80
T R+F +R S++ T+ + T VT RR SSAH H++ A+P +
Sbjct: 232 TRRRFADLRKRVSTTTKTSVTETENVTTTRRSSSAHS---THSKRSSAKPEV 280
>AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical
protein D1007.13a protein.
Length = 142
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -2
Query: 302 PQQASIAASTGPSQPTHRASWSYGTQIHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 129
P + +ST S P +S +YG+ I P F + ++WG T P L T
Sbjct: 15 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 72
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -2
Query: 302 PQQASIAASTGPSQPTHRASWSYGTQIHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 129
P + +ST S P +S +YG+ I P F + ++WG T P L T
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 177
>AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical
protein Y54G2A.13 protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -3
Query: 382 KLTSASRTPATTIPASSQIKARH*QSSHS--KPASQPQQDHRSRLTALPGPTARKFTASS 209
K+T+ + P TT ++ +K HS + A+ P Q+ + +T T+ + ++
Sbjct: 153 KVTTPTPPPPTTTTPTTTLKPTTSPEKHSTTEEATSPSQNETTSVTTQNPTTSNQKNETT 212
Query: 208 RRNSSSQPTTGSST 167
+SS PTT + T
Sbjct: 213 DEATSSPPTTTTPT 226
>Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = -3
Query: 367 SRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQ 188
S +PA PA A S + PQQ + T L FTA S NS++
Sbjct: 21 SNSPALACPAPIFAPAPQRASPWPAALASPQQTTFTSPTGLSSSGPSAFTAVSPTNSANS 80
Query: 187 PTTGSSTL 164
TT ++T+
Sbjct: 81 LTTSTATI 88
>Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = -3
Query: 367 SRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQ 188
S +PA PA A S + PQQ + T L FTA S NS++
Sbjct: 21 SNSPALACPAPIFAPAPQRASPWPAALASPQQTTFTSPTGLSSSGPSAFTAVSPTNSANS 80
Query: 187 PTTGSSTL 164
TT ++T+
Sbjct: 81 LTTSTATI 88
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -3
Query: 361 TPATTIPASSQIKARH*QSSHS-KPASQPQQDHRSRLTALPGPTARKFTASSRR---NSS 194
T T P+SS I + Q S S +P + + ++ P PT + S +S
Sbjct: 1468 TTVTVPPSSSSIGSTAPQGSSSIQPIASSSTMGSTAGSSSPQPTVSSTSVPSSTGATSSG 1527
Query: 193 SQPTTGSSTLGVTHPRRGSS 134
S T GSST+G T SS
Sbjct: 1528 SSTTVGSSTVGATQTSVSSS 1547
>AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical
protein F09G2.9 protein.
Length = 415
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 244 PGPTARKFTASSRRNSSSQP--TTGSSTLGVTHPRRGSSAHMDY 119
PGP A A+S + +++P ++ + PRR +S +DY
Sbjct: 235 PGPNATPKAAASEKKRAAKPKAAVNPESIAASRPRRSTSNRIDY 278
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 310 QSSHSKPASQPQQDHRSRLTAL-PGPTARKFTASSRRNSSSQPTTGSSTLGVTHPRRGSS 134
++ S S P+ RSR + P P R+ ++S+ SS + SS+ + P RG
Sbjct: 515 EARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERGRD 574
Query: 133 AHM 125
+++
Sbjct: 575 SNI 577
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 310 QSSHSKPASQPQQDHRSRLTAL-PGPTARKFTASSRRNSSSQPTTGSSTLGVTHPRRGSS 134
++ S S P+ RSR + P P R+ ++S+ SS + SS+ + P RG
Sbjct: 515 EARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERGRD 574
Query: 133 AHM 125
+++
Sbjct: 575 SNI 577
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = -3
Query: 376 TSASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNS 197
+S+S + T P S++ S+ + P+S + T+ GP++ T SS S
Sbjct: 464 SSSSSSTTVTTPTSTE-------STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTA-S 515
Query: 196 SSQPTTGSSTLGVTHPRRGSS 134
SS +T SST T ++ S+
Sbjct: 516 SSVSSTASSTQSSTSTQQSST 536
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = -3
Query: 376 TSASRTPATTIPASSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNS 197
+S+S + T P S++ S+ + P+S + T+ GP++ T SS S
Sbjct: 464 SSSSSSTTVTTPTSTE-------STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTA-S 515
Query: 196 SSQPTTGSSTLGVTHPRRGSS 134
SS +T SST T ++ S+
Sbjct: 516 SSVSSTASSTQSSTSTQQSST 536
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 45 ACKGQCCSKPAVSRG*A*MLRACRQ*SMCAELPRRGCVTPSVDDPVVGCDELLRR 209
+C+ QC S PAVS+ + C+ S C + T + PVV C + ++
Sbjct: 87 SCRQQCQSAPAVSQCQPMCQQQCQ--SQCTPMYNPPATTTTTPAPVVQCQPMCQQ 139
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 45 ACKGQCCSKPAVSRG*A*MLRACRQ*SMCAELPRRGCVTPSVDDPVVGCDELLRR 209
+C+ QC S PAVS+ + C+ S C + T + PVV C + ++
Sbjct: 87 SCRQQCQSAPAVSQCQPMCQQQCQ--SQCTPMYNPPATTTTTPAPVVQCQPMCQQ 139
>U40941-6|AAA81711.2| 435|Caenorhabditis elegans Jnk kinase protein
1 protein.
Length = 435
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 337 SSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPTTGSSTL 164
S+ + +H + S + +S PQ + + L P RKFT S + S S+ T L
Sbjct: 39 STSVDQKHKECSST--SSSPQHQRPNNIGYLTSPMERKFTPLSMKPSPSRRDTEKDAL 94
>U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform b
protein.
Length = 606
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -3
Query: 325 KARH*QSSHSK-PASQPQQ-DHRSRLTALPGPTARKFTASSRRNSSSQPTTGSSTLGVTH 152
K R+ +S +K P + P + + + +++LP A+KF + +S PT SS + +
Sbjct: 23 KRRNNNNSKNKTPNTFPNEIEEQDPVSSLPTFPAKKFGLKLQLTLTSSPTNSSSPISSSS 82
Query: 151 PRRG 140
P G
Sbjct: 83 PTNG 86
>AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform b protein.
Length = 849
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 307 SSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPT 182
+S P+ P R ++ PGP+ SS+ N S PT
Sbjct: 690 NSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPT 731
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 307 SSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPT 182
+S P+ P R ++ PGP+ SS+ N S PT
Sbjct: 926 NSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPT 967
>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
protein 17 protein.
Length = 1146
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 316 H*QSSHSKPASQPQQDHRSRLTALPGP-TARKFTASSRRNSS 194
H ++SH KP S+ + S+ + GP T+ K T SR ++
Sbjct: 476 HVEASHLKPISKKSKSEASQRSFASGPSTSTKLTVESRTETT 517
>AB024086-1|BAA82641.1| 435|Caenorhabditis elegans JKK-1 protein.
Length = 435
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 337 SSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARKFTASSRRNSSSQPTTGSSTL 164
S+ + +H + S + +S PQ + + L P RKFT S + S S+ T L
Sbjct: 39 STSVDQKHKECSST--SSSPQHQRPNNIGYLTSPMERKFTPLSMKPSPSRRDTEKDAL 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,975,050
Number of Sequences: 27780
Number of extensions: 300040
Number of successful extensions: 1182
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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