Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_L18
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.15 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 244 PGPTARKFTASSRRNSSSQPTTGSSTLGVTHPRRGSSAHMDYWRHARS 101
           P P  R  +A S   SSS P  G++  G    R G   +    +  +S
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKS 558



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 347 NPRILADKSTSLTVVPQQASIAASTGPSQ 261
           NPRI +  S+S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 213 HHAATVHRSPRPDHQRLGSHIPGVA 139
           HH   VHR  +P++  L S   G A
Sbjct: 26  HHNGVVHRDLKPENLLLASKAKGAA 50


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 407 DVLRDLNKKVDERIKNSGYHNPRILADKST 318
           D+LR+L KK+ +    +  H+ ++LA K T
Sbjct: 383 DILRELLKKIPDLRTLNTLHSEKLLAFKMT 412


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 599 LICWVPGCCV 628
           LICWVP  CV
Sbjct: 282 LICWVPFFCV 291


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 154 HPRRGSSAHMDYWRH 110
           HP RGSS H  +  H
Sbjct: 327 HPHRGSSPHHQHGNH 341


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 657 IXFLTTALYSTQQPGTQQIS 598
           I F   +LY T++P  QQ+S
Sbjct: 500 IIFQAPSLYDTREPVDQQLS 519


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 213 HHAATVHRSPRPDHQR 166
           HH    HR  R D++R
Sbjct: 156 HHGMAYHRGHRKDYER 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,304
Number of Sequences: 438
Number of extensions: 3791
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)