Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_L17
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       29   4.1  
11_06_0407 + 23205895-23206255,23206482-23206690                       28   9.6  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 26/99 (26%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
 Frame = -3

Query: 746 GXGXXXGXRXXRXXGXGGEX-PGXXXGXXPXPXXXXXXXXXXAGGXXGXXPXEXGGXXXX 570
           G G   G R     G GG   P    G                GG  G  P   GG    
Sbjct: 123 GAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPP---GGGGGG 179

Query: 569 XXPGXXXGXXXXXXXPARRPXGXXGXXGXXXXGXXXXXP 453
             PG   G       P R P G  G  G    G     P
Sbjct: 180 GGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGGAP 218


>11_06_0407 + 23205895-23206255,23206482-23206690
          Length = 189

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 267 G*WSEVTSIREVGDEAPERRGWRAA 341
           G WSEV SI     +A   RGW+ A
Sbjct: 8   GWWSEVASIAMANGDAVASRGWKEA 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,303,457
Number of Sequences: 37544
Number of extensions: 121823
Number of successful extensions: 305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)