Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_L16
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.1  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   7.1  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   9.4  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   9.4  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 321 LRSLISNLSNTCDLTPLPEWSCEQSAW 241
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 733 WPNDMQTXTFKFGSRMHNSDEMDFVIDKRIYSMFES 626
           WP D+ T    FG+     D  D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 529 SGKTSGTLPRELPPRHGPGSAPHWTEPSHPTLL 627
           S  +SG++   + PR    S   ++E SHPT +
Sbjct: 523 SSSSSGSVVSAVKPRRSAVSNDRFSEDSHPTYI 555


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 778 KRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNS 677
           K LD S+  SM++++W N       +  SR+H S
Sbjct: 162 KFLDKSSG-SMEIESWDNSTSDSIIESSSRLHES 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,341
Number of Sequences: 5004
Number of extensions: 30566
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)