Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_L16
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    36   0.044
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    36   0.044
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    36   0.044
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    32   0.41 
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    32   0.41 
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    32   0.41 
Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine...    30   2.2  
X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic acety...    29   2.9  
U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine r...    29   2.9  

>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = -2

Query: 784 WIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDE--MDFVIDKRI-YSMFE-SGAW 617
           W+      +S  + ++ +P D Q  +  FGS  +N DE  +DF+   R+ +S +  S  W
Sbjct: 153 WVPPAIYKSSCIIDVEFFPFDDQLCSLTFGSWTYNRDEIKLDFLTSDRVDFSEYSTSSIW 212

Query: 616 DVTALSSAVQSQDRGEVEARV 554
           D+     AV + DR  +E ++
Sbjct: 213 DMMD-GPAVLTSDRSRIEFQI 232


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = -2

Query: 784 WIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDE--MDFVIDKRI-YSMFE-SGAW 617
           W+      +S  + ++ +P D Q  +  FGS  +N DE  +DF+   R+ +S +  S  W
Sbjct: 153 WVPPAIYKSSCIIDVEFFPFDDQLCSLTFGSWTYNRDEIKLDFLTSDRVDFSEYSTSSIW 212

Query: 616 DVTALSSAVQSQDRGEVEARV 554
           D+     AV + DR  +E ++
Sbjct: 213 DMMD-GPAVLTSDRSRIEFQI 232


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = -2

Query: 784 WIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDE--MDFVIDKRI-YSMFE-SGAW 617
           W+      +S  + ++ +P D Q  +  FGS  +N DE  +DF+   R+ +S +  S  W
Sbjct: 153 WVPPAIYKSSCIIDVEFFPFDDQLCSLTFGSWTYNRDEIKLDFLTSDRVDFSEYSTSSIW 212

Query: 616 DVTALSSAVQSQDRGEVEARV 554
           D+     AV + DR  +E ++
Sbjct: 213 DMMD-GPAVLTSDRSRIEFQI 232


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
 Frame = -2

Query: 784 WIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDE--MDFV----IDKRIYSMFESG 623
           W+      +S  + ++ +P D Q  T  FGS  +N +E  ++FV    +D   YS   S 
Sbjct: 145 WVPPAIYKSSCIIDVEFFPFDEQVCTLVFGSWTYNENEIKLEFVQAELVDVSEYS--ASS 202

Query: 622 AWDVTAL-SSAVQSQDRGEVEARV 554
            WDV  + +S V  + R E + R+
Sbjct: 203 IWDVIDVPASLVNKRSRIEFQVRI 226


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
 Frame = -2

Query: 784 WIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDE--MDFV----IDKRIYSMFESG 623
           W+      +S  + ++ +P D Q  T  FGS  +N +E  ++FV    +D   YS   S 
Sbjct: 145 WVPPAIYKSSCIIDVEFFPFDEQVCTLVFGSWTYNENEIKLEFVQAELVDVSEYS--ASS 202

Query: 622 AWDVTAL-SSAVQSQDRGEVEARV 554
            WDV  + +S V  + R E + R+
Sbjct: 203 IWDVIDVPASLVNKRSRIEFQVRI 226


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
 Frame = -2

Query: 784 WIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDE--MDFV----IDKRIYSMFESG 623
           W+      +S  + ++ +P D Q  T  FGS  +N +E  ++FV    +D   YS   S 
Sbjct: 145 WVPPAIYKSSCIIDVEFFPFDEQVCTLVFGSWTYNENEIKLEFVQAELVDVSEYS--ASS 202

Query: 622 AWDVTAL-SSAVQSQDRGEVEARV 554
            WDV  + +S V  + R E + R+
Sbjct: 203 IWDVIDVPASLVNKRSRIEFQVRI 226


>Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical
           protein C31H5.3 protein.
          Length = 554

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -2

Query: 787 SWIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHN---SDEMDFVIDKRIYSMFESGAW 617
           +WI    I +S ++ +  +P D Q  T KFGS  ++   +D ++  I    Y    +G W
Sbjct: 138 TWIPPAIIRSSCAIDIAYFPFDTQHCTMKFGSWTYSGFFTDLINTTISPATYK--PNGEW 195

Query: 616 DVTALSS 596
           ++  L+S
Sbjct: 196 ELLGLTS 202


>AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine
           receptor (63.2 kD)(acr-19) protein.
          Length = 554

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -2

Query: 787 SWIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHN---SDEMDFVIDKRIYSMFESGAW 617
           +WI    I +S ++ +  +P D Q  T KFGS  ++   +D ++  I    Y    +G W
Sbjct: 138 TWIPPAIIRSSCAIDIAYFPFDTQHCTMKFGSWTYSGFFTDLINTTISPATYK--PNGEW 195

Query: 616 DVTALSS 596
           ++  L+S
Sbjct: 196 ELLGLTS 202


>X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -2

Query: 787 SWIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDEM-----DFVIDKRIYSMFESG 623
           +W+      +S  + ++ +P D Q  T  FGS  +NS+E+     + +   +++    SG
Sbjct: 174 TWVPPAMFKSSCRIDVEWFPFDEQCCTLVFGSWTYNSEEVRLHWYNNIQAVQLHDYSYSG 233

Query: 622 AWDV 611
            WDV
Sbjct: 234 IWDV 237


>U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine
           receptor protein 2 protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -2

Query: 787 SWIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDEM-----DFVIDKRIYSMFESG 623
           +W+      +S  + ++ +P D Q  T  FGS  +NS+E+     + +   +++    SG
Sbjct: 174 TWVPPAMFKSSCRIDVEWFPFDEQCCTLVFGSWTYNSEEVRLHWYNNIQAVQLHDYSYSG 233

Query: 622 AWDV 611
            WDV
Sbjct: 234 IWDV 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,316,855
Number of Sequences: 27780
Number of extensions: 190132
Number of successful extensions: 532
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)