Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_L16
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    33   0.002
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    32   0.007
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    27   0.20 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.35 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.35 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 784 WIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDEMDFVI--DKRIYSM---FESGA 620
           W+      +S ++ +  +P D QT   KFGS   N D++   +  +K    +   ++SG 
Sbjct: 141 WVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGT 200

Query: 619 WDV 611
           WD+
Sbjct: 201 WDI 203


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 31.9 bits (69), Expect = 0.007
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 736 NWPNDMQTXTFKFGSRMHNSDEMDFVIDKRIYSM---FESGAWDVTALSS 596
           +WP D       FGS +H+ +E++  +DK+ + M     +  WD   + +
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHMDGYTNNSKWDFKVIKA 224


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 775 RLDISTSISMQLDNWPNDMQTXTFKFGS 692
           RL I     M L+N+P D Q    +FGS
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQFGS 150


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 784 WIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDEMDFVID 653
           ++ +L +  S +M    +P+D Q    +  S  H +DEM F  D
Sbjct: 153 YMVKLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQWD 196


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 787 SWIKRLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDEMD 665
           SW       +S  + ++ +P D Q+   KFGS  +N  ++D
Sbjct: 147 SWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNGAQVD 187


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 315 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 217
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 775 RLDISTSISMQLDNWPNDMQTXTFKFGSRMHNSDEM 668
           RL  + +  ++L+ +P D+Q     F S  HN  +M
Sbjct: 135 RLQATLNCGLRLEKFPFDVQECPLIFESWTHNVLDM 170


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 603 CPVRCRARTVARWKLAWQCS 544
           C VRC A +  RW   W+ S
Sbjct: 19  CSVRCSAASGLRWFEIWRDS 38


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 733 WPNDMQTXTFKFGSRMHNSDEM 668
           WP D+   T    S  H S+E+
Sbjct: 166 WPYDILNCTIHIASWSHGSNEI 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,555
Number of Sequences: 438
Number of extensions: 2139
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)