Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_L10
         (781 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   302   4e-82
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   302   4e-82
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   302   4e-82
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   302   4e-82
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   302   4e-82
AE014297-510|AAF54086.1|  203|Drosophila melanogaster CG1162-PA ...    30   3.1  
AE001572-9|AAD19799.1|  222|Drosophila melanogaster unknown prot...    30   3.1  

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  302 bits (741), Expect = 4e-82
 Identities = 139/165 (84%), Positives = 149/165 (90%)
 Frame = -2

Query: 588 HKEATPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409
           H +  P +  KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 247 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 306

Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 229
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 307 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 366

Query: 228 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 367 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 411



 Score =  128 bits (310), Expect = 6e-30
 Identities = 56/69 (81%), Positives = 62/69 (89%)
 Frame = -3

Query: 779 QRQKKAHIMESXXNGGTIEDKVKWAREHLEEPIPVDSVFAQDEMIDCICVTKGKGYKGVT 600
           QRQKKAH+ME   NGG+IEDKVKWAREHLE+PI V +VF QDEMIDC+ VTKGKG+KGVT
Sbjct: 184 QRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVT 243

Query: 599 SRWHTKKLP 573
           SRWHTKKLP
Sbjct: 244 SRWHTKKLP 252


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  302 bits (741), Expect = 4e-82
 Identities = 139/165 (84%), Positives = 149/165 (90%)
 Frame = -2

Query: 588 HKEATPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409
           H +  P +  KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 236 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 295

Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 229
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 296 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 355

Query: 228 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 356 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400



 Score =  128 bits (310), Expect = 6e-30
 Identities = 56/69 (81%), Positives = 62/69 (89%)
 Frame = -3

Query: 779 QRQKKAHIMESXXNGGTIEDKVKWAREHLEEPIPVDSVFAQDEMIDCICVTKGKGYKGVT 600
           QRQKKAH+ME   NGG+IEDKVKWAREHLE+PI V +VF QDEMIDC+ VTKGKG+KGVT
Sbjct: 173 QRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVT 232

Query: 599 SRWHTKKLP 573
           SRWHTKKLP
Sbjct: 233 SRWHTKKLP 241


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  302 bits (741), Expect = 4e-82
 Identities = 139/165 (84%), Positives = 149/165 (90%)
 Frame = -2

Query: 588 HKEATPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409
           H +  P +  KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 223 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 282

Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 229
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 283 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 342

Query: 228 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 343 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387



 Score =  128 bits (310), Expect = 6e-30
 Identities = 56/69 (81%), Positives = 62/69 (89%)
 Frame = -3

Query: 779 QRQKKAHIMESXXNGGTIEDKVKWAREHLEEPIPVDSVFAQDEMIDCICVTKGKGYKGVT 600
           QRQKKAH+ME   NGG+IEDKVKWAREHLE+PI V +VF QDEMIDC+ VTKGKG+KGVT
Sbjct: 160 QRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVT 219

Query: 599 SRWHTKKLP 573
           SRWHTKKLP
Sbjct: 220 SRWHTKKLP 228


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  302 bits (741), Expect = 4e-82
 Identities = 139/165 (84%), Positives = 149/165 (90%)
 Frame = -2

Query: 588 HKEATPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409
           H +  P +  KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 223 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 282

Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 229
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 283 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 342

Query: 228 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 343 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387



 Score =  128 bits (310), Expect = 6e-30
 Identities = 56/69 (81%), Positives = 62/69 (89%)
 Frame = -3

Query: 779 QRQKKAHIMESXXNGGTIEDKVKWAREHLEEPIPVDSVFAQDEMIDCICVTKGKGYKGVT 600
           QRQKKAH+ME   NGG+IEDKVKWAREHLE+PI V +VF QDEMIDC+ VTKGKG+KGVT
Sbjct: 160 QRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVT 219

Query: 599 SRWHTKKLP 573
           SRWHTKKLP
Sbjct: 220 SRWHTKKLP 228


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  302 bits (741), Expect = 4e-82
 Identities = 139/165 (84%), Positives = 149/165 (90%)
 Frame = -2

Query: 588 HKEATPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409
           H +  P +  KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 236 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 295

Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 229
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 296 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 355

Query: 228 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 356 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400



 Score =  128 bits (310), Expect = 6e-30
 Identities = 56/69 (81%), Positives = 62/69 (89%)
 Frame = -3

Query: 779 QRQKKAHIMESXXNGGTIEDKVKWAREHLEEPIPVDSVFAQDEMIDCICVTKGKGYKGVT 600
           QRQKKAH+ME   NGG+IEDKVKWAREHLE+PI V +VF QDEMIDC+ VTKGKG+KGVT
Sbjct: 173 QRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVT 232

Query: 599 SRWHTKKLP 573
           SRWHTKKLP
Sbjct: 233 SRWHTKKLP 241


>AE014297-510|AAF54086.1|  203|Drosophila melanogaster CG1162-PA
           protein.
          Length = 203

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = +1

Query: 472 ITFLTSTSYSERHPRRMPSSNAGNFPKTLXVSYGGSFFVCQREVTPLYPLPLVTQMQSII 651
           +T L S  Y +   RR   S   +F  T   + GGSF  C +        P++       
Sbjct: 82  LTALLSLHYEDNCGRRATKSRDNSFGFTFSAATGGSFNRCYKLDNNRLGSPIIISP---- 137

Query: 652 SSWANTESTGIGSSRCSL 705
           S+W ++ S G G+   SL
Sbjct: 138 STWRDSGSCGPGTLELSL 155


>AE001572-9|AAD19799.1|  222|Drosophila melanogaster unknown
           protein.
          Length = 222

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = +1

Query: 472 ITFLTSTSYSERHPRRMPSSNAGNFPKTLXVSYGGSFFVCQREVTPLYPLPLVTQMQSII 651
           +T L S  Y +   RR   S   +F  T   + GGSF  C +        P++       
Sbjct: 101 LTALLSLHYEDNCGRRATKSRDNSFGFTFSAATGGSFNRCYKLDNNRLGSPIIISP---- 156

Query: 652 SSWANTESTGIGSSRCSL 705
           S+W ++ S G G+   SL
Sbjct: 157 STWRDSGSCGPGTLELSL 174


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,489,562
Number of Sequences: 53049
Number of extensions: 841131
Number of successful extensions: 2302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2302
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)