Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_L08
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312...    29   3.2  
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535...    28   7.3  
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144...    28   7.3  
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806...    28   7.3  

>02_03_0388 +
           18429538-18430598,18430971-18431081,18431165-18431237,
           18431513-18431695
          Length = 475

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 361 HTRAPAPLXXPXRTPXXAPACAXPAGXXPASPXPARXRXXP 483
           H  AP+P   P  TP  APA   P    PA P  +R    P
Sbjct: 93  HAPAPSPPQAPAMTPPQAPAPTPPQAPRPA-PSKSRAPQAP 132


>06_03_0310 -
           19453047-19453160,19453240-19453338,19453441-19453513,
           19453598-19453708,19453795-19453956,19454064-19454340,
           19454542-19455160,19455256-19455471
          Length = 556

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 361 HTRAPAPLXXPXRTPXXAPACAXPAGXXPASP 456
           H  AP P   P  TP  APA   P    P  P
Sbjct: 169 HAPAPPPPQAPAPTPPQAPAPTPPRAPTPTPP 200


>05_01_0201 -
           1441063-1443836,1444658-1445758,1446367-1447179,
           1447386-1447440
          Length = 1580

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 361 HTRAPAPLXXPXRTPXXAPACAXPAGXXPASPXPA 465
           HT APAP   P   P   P CA P     A+P PA
Sbjct: 242 HTPAPAPCVSPVAAPSPTP-CASPV----AAPSPA 271


>03_04_0034 +
           16679624-16679940,16679980-16680199,16680319-16680624,
           16680703-16681044,16681066-16681257,16681533-16681684,
           16681803-16681974,16682017-16682338,16682414-16682862
          Length = 823

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -3

Query: 500 PXSXXXGXXRXRAGXGEAGXXPAGXAXAGAXXGVRXGXXSGAGARV 363
           P     G     AG G AG   AG   AGA  G       G GA V
Sbjct: 105 PRVGGGGVQGAAAGGGRAGAASAGGGVAGAVVGGGGAAVGGGGAAV 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,304,264
Number of Sequences: 37544
Number of extensions: 116735
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)