Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_L06
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 104 7e-23
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 104 7e-23
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
01_05_0535 - 23001864-23005052 29 3.2
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.5
06_03_0543 + 21967787-21970261 29 5.5
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.3
04_04_0907 + 29304830-29305030,29305296-29305547 28 7.3
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 104 bits (250), Expect = 7e-23
Identities = 45/77 (58%), Positives = 57/77 (74%)
Frame = -2
Query: 599 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 420
P DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMR 190
Query: 419 GVLPRDQRWDVVVDLFF 369
G + +WDV+VDLFF
Sbjct: 191 GTILPGHKWDVMVDLFF 207
Score = 95.5 bits (227), Expect = 4e-20
Identities = 44/63 (69%), Positives = 51/63 (80%)
Frame = -1
Query: 780 AIENPXDVXVXSSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLD 601
AIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ D
Sbjct: 71 AIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTD 130
Query: 600 PCT 592
P T
Sbjct: 131 PRT 133
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 104 bits (250), Expect = 7e-23
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = -2
Query: 599 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 420
P DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMR 190
Query: 419 GVLPRDQRWDVVVDLFF 369
G + +WDV+VDLFF
Sbjct: 191 GTILPGHKWDVMVDLFF 207
Score = 95.5 bits (227), Expect = 4e-20
Identities = 44/63 (69%), Positives = 51/63 (80%)
Frame = -1
Query: 780 AIENPXDVXVXSSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLD 601
AIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ D
Sbjct: 71 AIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTD 130
Query: 600 PCT 592
P T
Sbjct: 131 PRT 133
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 208 TRCSSCFWSTPCSRRMVCPGTR 143
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>01_05_0535 - 23001864-23005052
Length = 1062
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -2
Query: 512 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFXP*XLKKV---- 345
FV + C+ GL ++ E++ G+LPR + + V+DL L K+
Sbjct: 792 FVSVLSACSHAGLVERGLDYF----ELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYM 847
Query: 344 KRMNNKPRNRLW 309
KRM KP +W
Sbjct: 848 KRMPMKPNTLIW 859
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 712 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 605
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 461 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 372
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>04_04_0907 + 29304830-29305030,29305296-29305547
Length = 150
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 608 YWTPAQDHQPITE-ASYVNIPVIALCNTDSPLRFVDIAIPCNT 483
Y P D + E A+ NIP+I L + D P +IA C T
Sbjct: 20 YARPESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,049,297
Number of Sequences: 37544
Number of extensions: 405284
Number of successful extensions: 1060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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