Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_L04
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
07_03_0846 - 21983581-21986055 29 3.1
03_05_1088 + 30301654-30303480 29 4.1
03_05_0183 - 21681673-21682524 29 4.1
02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885 29 5.5
09_04_0235 + 15904891-15905218,15906732-15907594 28 7.2
08_02_1485 - 27466761-27467753 28 7.2
11_01_0407 + 3090880-3092010 28 9.6
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.6
03_01_0260 - 1999462-1999488,1999748-1999930,2000940-2001146,200... 28 9.6
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 220 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 86
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 78 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 227
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>03_05_1088 + 30301654-30303480
Length = 608
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 289 PGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGG 161
P R+ G+ L ++ C N AE + K++L +EP E GG
Sbjct: 530 PSRSIWGSILSASSACQNTEVAEIA----SKELLCLEPAEEGG 568
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 520 SQAFIATLLFDPSMSALPIIAKQNSPS 440
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885
Length = 466
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 159 EPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPG 290
+PP G S+ P SA L S+L A + P + PP + G
Sbjct: 31 KPPSGGGIFSSLPQPKSALLFSSLPAPKSGPVFSAIPPPKSSSG 74
>09_04_0235 + 15904891-15905218,15906732-15907594
Length = 396
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 78 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 254
++RDP+ G+R + + +++ E RG ++ PD +A L ++
Sbjct: 150 EIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAK 209
Query: 255 DGSFAPP 275
APP
Sbjct: 210 QEKLAPP 216
>08_02_1485 - 27466761-27467753
Length = 330
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 162 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARP 287
PP + G +S +P A LA++L + NPA P + P
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPASPPPPPTSKLP 80
>11_01_0407 + 3090880-3092010
Length = 376
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 346 IVILLSNERNRSFGHLVHAPGRAAGGAKLPSAGLCLNASKAEASLAES 203
+ LS+ RNRSFG +P R+A A S+ ++S SL+ S
Sbjct: 147 VASFLSSHRNRSFGRARASPSRSATLASSSSSSSSSSSSSHFRSLSWS 194
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 229 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 56
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 55 TRASR 41
TRA+R
Sbjct: 64 TRAAR 68
>03_01_0260 -
1999462-1999488,1999748-1999930,2000940-2001146,
2001895-2002359
Length = 293
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +3
Query: 36 RSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 215
R DAR++ + ++ +G++RR + + E R + + D+ + +A
Sbjct: 73 RQFDARLRGRREAAARAAASGVKRRKAVSDLEERERAASTGQAVDAAEAARREDKRKAAD 132
Query: 216 LASALEAF-RHNPADGSFAPPAARPGA*TKCPK 311
+ LE F + S PPA+ PGA PK
Sbjct: 133 VKRELEEFFAAKQSASSSTPPASAPGAPQDAPK 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,904,772
Number of Sequences: 37544
Number of extensions: 467940
Number of successful extensions: 1308
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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