Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_K24
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0146 + 26969011-26969995,26970878-26970930 32 0.53
12_02_0299 - 17051570-17052474,17053542-17053755 30 2.1
07_03_0558 + 19461369-19462448 30 2.8
06_01_0178 + 1386981-1387505 29 4.9
08_01_0500 + 4338111-4338195,4339910-4340042,4340116-4340187,434... 29 6.5
07_01_0080 + 587674-588510 29 6.5
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440... 29 6.5
03_01_0515 - 3864796-3865425 28 8.6
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 8.6
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 32.3 bits (70), Expect = 0.53
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +1
Query: 733 PPXXXXXAXXXXPXXXXPXXPXXXARPCPXXSPXXPPPPXSXP 861
PP A P P +RP P +P PPPP + P
Sbjct: 44 PPPPPLPASAAAPTTPSPNHSGDPSRPIPSQAPAPPPPPTADP 86
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/108 (24%), Positives = 27/108 (25%), Gaps = 2/108 (1%)
Frame = +1
Query: 559 PMXPXRPPXPXPGLPXXXXSPAXXXXXXPXXXXXXFXXXXXXLXX--SLPXPRCXXTFXX 732
P P P P P LP P F + P P F
Sbjct: 227 PPIPFLTPPPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFS- 285
Query: 733 PPXXXXXAXXXXPXXXXPXXPXXXARPCPXXSPXXPPPPXSXPXXXPS 876
PP P P P P P PPPP P PS
Sbjct: 286 PPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPS 333
>07_03_0558 + 19461369-19462448
Length = 359
Score = 29.9 bits (64), Expect = 2.8
Identities = 29/124 (23%), Positives = 30/124 (24%), Gaps = 1/124 (0%)
Frame = -1
Query: 887 GXXPXGXXXGKXXGGGGXXGXXXGQGRAXQXG-XXGXXXXGXXXXAXXXXXGGXXXVXXX 711
G G G GGGG G GQG G G G GG +
Sbjct: 89 GGASGGVGGGGGFGGGGGGGLGGGQGGGFGGGAGAGGGAGGGLGGGGGFGGGGGGGLGGG 148
Query: 710 RGXGRDXXRXXXXXXXXXXXXXGXXXXXXAGEXXXXGSPGXGXGGRXGXMGXPXXXXXXG 531
G G G G G G G GG G G G
Sbjct: 149 GGHGGGFGAGGGVGGGAGGGVGGGGGFGGGGGGGLGGGHGGGFGGGAGVGGGAGGGVGGG 208
Query: 530 XXXG 519
G
Sbjct: 209 GGFG 212
>06_01_0178 + 1386981-1387505
Length = 174
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/105 (27%), Positives = 30/105 (28%)
Frame = -1
Query: 872 GXXXGKXXGGGGXXGXXXGQGRAXQXGXXGXXXXGXXXXAXXXXXGGXXXVXXXRGXGRD 693
G G GGGG G G+G A G G G GG G G
Sbjct: 41 GGGGGGGGGGGGGAGGKGGKGGAGGHGGAGGGGGGGGGKGRKGGAGGHGGAGGGGGGGGG 100
Query: 692 XXRXXXXXXXXXXXXXGXXXXXXAGEXXXXGSPGXGXGGRXGXMG 558
R G AG G G G GGR G G
Sbjct: 101 KGR--------KGGRGGDGGSGGAGGRGGDGGSG-GQGGRGGDGG 136
>08_01_0500 +
4338111-4338195,4339910-4340042,4340116-4340187,
4340524-4340587,4341383-4341459,4341586-4341657,
4341741-4341853,4341995-4342126,4342204-4342545,
4342628-4343022,4343293-4343603,4343967-4344066
Length = 631
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 808 RPCPXXSPXXPPPPXSXP 861
+PCP P PPPP + P
Sbjct: 182 KPCPGAPPFSPPPPYNPP 199
>07_01_0080 + 587674-588510
Length = 278
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 733 PPXXXXXAXXXXPXXXXPXXPXXXARPCPXXSPXXPPPPXSXP 861
PP P P P + P P P PPPP P
Sbjct: 79 PPRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPPPP 121
>04_04_0111 -
22842337-22842648,22843008-22843402,22843732-22844073,
22844154-22844282,22844402-22844514,22844596-22844667,
22844783-22844859,22844978-22845052,22845058-22845121,
22845332-22845403,22845496-22845628,22846859-22846961
Length = 628
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 808 RPCPXXSPXXPPPPXSXP 861
+PCP P PPPP + P
Sbjct: 213 KPCPGAPPFSPPPPFNPP 230
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/48 (29%), Positives = 17/48 (35%)
Frame = +1
Query: 733 PPXXXXXAXXXXPXXXXPXXPXXXARPCPXXSPXXPPPPXSXPXXXPS 876
PP + P P P + P P SP P P S P P+
Sbjct: 74 PPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPPA 121
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 733 PPXXXXXAXXXXPXXXXPXXPXXXARPCPXXSPXXPPPP 849
PP A P P P P P S PPPP
Sbjct: 274 PPPAHAPAETPAPPTTPPALPPATTAPSPKNSSSSPPPP 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,955,090
Number of Sequences: 37544
Number of extensions: 138493
Number of successful extensions: 1556
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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