Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_K24
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    30   1.9  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.8  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/58 (27%), Positives = 16/58 (27%)
 Frame = +1

Query: 700 PXPRCXXTFXXPPXXXXXAXXXXPXXXXPXXPXXXARPCPXXSPXXPPPPXSXPXXXP 873
           P P        PP          P    P  P     P P   P  PPPP   P   P
Sbjct: 29  PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 28/109 (25%), Positives = 30/109 (27%), Gaps = 2/109 (1%)
 Frame = +1

Query: 559 PMXPXRPPXPXPGLPXXXXSPAXXXXXXPXXXXXXFXXXXXXLXXSLPXPRCXXTFXXPP 738
           PM P  PP P  G+      P       P                 +P P     F  PP
Sbjct: 272 PMPPPMPPTP--GMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG-PP 328

Query: 739 XXXXXAXXXXPXXXXPXXPXXXARP-CPXXSPXX-PPPPXSXPXXXPSG 879
                     P    P        P  P   P   PPPP S P   PSG
Sbjct: 329 GMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 377


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 28/109 (25%), Positives = 30/109 (27%), Gaps = 2/109 (1%)
 Frame = +1

Query: 559 PMXPXRPPXPXPGLPXXXXSPAXXXXXXPXXXXXXFXXXXXXLXXSLPXPRCXXTFXXPP 738
           PM P  PP P  G+      P       P                 +P P     F  PP
Sbjct: 282 PMPPPMPPTP--GMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG-PP 338

Query: 739 XXXXXAXXXXPXXXXPXXPXXXARP-CPXXSPXX-PPPPXSXPXXXPSG 879
                     P    P        P  P   P   PPPP S P   PSG
Sbjct: 339 GMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 387


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 784 PXXPXXXARPCPXXSPXXPPPPXSXPXXXP 873
           P  P      CP  +P  PPPP   P   P
Sbjct: 123 PAPPNPPRTCCPPPTPAAPPPPPPPPPPAP 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,709,671
Number of Sequences: 27780
Number of extensions: 88764
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)