Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_K20
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 276 2e-75
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 272 5e-74
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 114 2e-26
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 1e-09
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 36 0.005
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 35 0.015
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 32 0.11
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 31 0.14
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.19
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.25
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.33
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.33
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.58
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.1
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 4.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 26 5.4
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.4
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 9.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 276 bits (677), Expect = 2e-75
Identities = 120/149 (80%), Positives = 135/149 (90%)
Frame = -2
Query: 579 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 400
EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPT
Sbjct: 294 EITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPT 353
Query: 399 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTAAIAEAWARLDHKFDLMYAKRAFVHWYV 220
GFK+GI Y+PP VPG +AKV RAVCMLSNT +IAEAW+RLDHKFDLMY+KRAFVHWYV
Sbjct: 354 GFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYV 413
Query: 219 GEGMEEGEFSEAREDLAALEKDYEEVGMD 133
GEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 414 GEGMEEGEFSEAREDLAALERDYEEVGQD 442
Score = 75.8 bits (178), Expect = 7e-15
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = -1
Query: 712 GAXNVDLTEFQTNXVPYPRIHFPLVTYAPVISAEKAYHEQLSV 584
G+ NVDL EFQTN VPYPRIHFPLVTY+P++SA KA+HE SV
Sbjct: 250 GSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSV 292
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 272 bits (666), Expect = 5e-74
Identities = 119/149 (79%), Positives = 133/149 (89%)
Frame = -2
Query: 579 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 400
EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPT
Sbjct: 290 EITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPT 349
Query: 399 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTAAIAEAWARLDHKFDLMYAKRAFVHWYV 220
GFK+GI +PP + G ++AKV RAVCMLSNT +IAEAW+RLDHKFDLMY+KRAFVHWYV
Sbjct: 350 GFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYV 409
Query: 219 GEGMEEGEFSEAREDLAALEKDYEEVGMD 133
GEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 410 GEGMEEGEFSEAREDLAALERDYEEVGQD 438
Score = 77.8 bits (183), Expect = 2e-15
Identities = 33/44 (75%), Positives = 38/44 (86%)
Frame = -1
Query: 715 DGAXNVDLTEFQTNXVPYPRIHFPLVTYAPVISAEKAYHEQLSV 584
+G+ NVDL EFQTN VPYPRIHFPLVTYAP++SA KA+HE SV
Sbjct: 245 EGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSV 288
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 114 bits (274), Expect = 2e-26
Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Frame = -2
Query: 585 LPEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWC 406
+PE+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W
Sbjct: 286 VPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWI 345
Query: 405 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTAAIAEAWARLDHKFDLMYAKRAFVHW 226
P + PP DL + + + N+ +I E + RL +F M+ ++AF+HW
Sbjct: 346 PDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHW 397
Query: 225 YVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 133
Y GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = -1
Query: 712 GAXNVDLTEFQTNXVPYPRIHFPLVTYAPVISAEKAYHEQLSVARDHKRMLRA 554
G N DL + N VP+PR+HF +V +AP+ + + + +SV ++M A
Sbjct: 244 GELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDA 296
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.0 bits (134), Expect = 1e-09
Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Frame = -2
Query: 555 PANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 379
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 378 YQPPTVVPGGDLAKVQRAVCMLSNTAAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE- 202
+ P + ++ + ML+N +IA + R ++D + + AF+ Y E + E
Sbjct: 362 KKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFED 416
Query: 201 --GEFSEAREDLAALEKDYE 148
EF +R+ +A L +YE
Sbjct: 417 DLNEFDSSRDVVADLINEYE 436
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 712 GAXNVDLTEFQTNXVPYPRIHFPLVTYAP 626
G N DL + +P PR HF L +Y P
Sbjct: 247 GYMNNDLVSIIASLIPSPRCHFLLTSYTP 275
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 36.3 bits (80), Expect = 0.005
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Frame = -3
Query: 476 YPRM*TRPSLP----SKPSVLSN-SSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 312
YP P+LP SKP V+ N V P +R + P+ ++P P+ C
Sbjct: 166 YPVSLPSPNLPHQPISKPPVIPNLPKLQVHP-NRLPHPIHNHPYSSPTSYPPPLCPATYC 224
Query: 311 PTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP--KPVRTWLPSKRITKKSA 138
P+ PP L A+ SS S ++ + T + + P + WLP + T
Sbjct: 225 PSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMTQPT---- 280
Query: 137 WTPLKARVREPKS 99
+ P A V +P S
Sbjct: 281 FQPPSANVYQPAS 293
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 34.7 bits (76), Expect = 0.015
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 4/153 (2%)
Frame = -3
Query: 533 AIPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVST-TSHPPWC 357
+IP ++ V TV + + P P+ S SS+ + S S +T TS PP
Sbjct: 290 SIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTG 349
Query: 356 PEATWPRFNVP---SACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPK 186
T VP ++ TPPP T+SS + S SCT TS + +S
Sbjct: 350 NSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTST-SCT-TSTSIPPTGNSTT 407
Query: 185 PVRTWLPSKRITKKSAWTPLKARVREPKSTKPV 87
PV +P + T P ++ PV
Sbjct: 408 PVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Score = 30.3 bits (65), Expect = 0.33
Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 11/140 (7%)
Frame = -3
Query: 605 LP*TAFRCPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSLP---SKP 435
LP T+ C T S PPT +++ + + T TS P T S S P
Sbjct: 108 LPSTSTSCT---TSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNP 164
Query: 434 ----SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKL----GL 279
S +ST + P S S ++ P P T P + S P PP S
Sbjct: 165 LPTTSTSCTTSTSIPPTGGSSSLST--PITP--TVPPTSTSSTSIPIPPTSTSSTDTNSS 220
Query: 278 ALTTSSTSCTPSVLSCTGTS 219
L T+STSCT S TG S
Sbjct: 221 PLPTTSTSCTTSTSIPTGGS 240
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.11
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -3
Query: 326 PSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--KRI 153
P+ + P + G+ TS TS T S S++ S+P P W P+
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSA 193
Query: 152 TKKSAWTPLKARVREPKSTK 93
S+ TP+ V EP+ TK
Sbjct: 194 LGTSSKTPVYVVVDEPRFTK 213
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/85 (25%), Positives = 35/85 (41%)
Frame = -3
Query: 443 SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTS 264
S P+ S + PVS + T + PP A R N A P + + A T S
Sbjct: 1001 SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVS 1058
Query: 263 STSCTPSVLSCTGTSVRVWRRESSP 189
++ PS ++ +S + S+P
Sbjct: 1059 ASKPAPSTVTSAASSPSNISKPSAP 1083
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.19
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -3
Query: 434 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTS 255
S+L +S+ P+S + STT+ T ++ TP S+ + T +STS
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTS 339
Query: 254 CTP--SVLSCTGTS 219
TP SV S T TS
Sbjct: 340 STPLSSVNSTTATS 353
Score = 26.6 bits (56), Expect = 4.1
Identities = 32/120 (26%), Positives = 47/120 (39%)
Frame = -3
Query: 575 SQTHASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPV 396
S T +S+P + + AS+ T+ T S S + + +ST P+
Sbjct: 284 SSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPL 343
Query: 395 SRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSV 216
S STT+ T ++ TP S+ A + SST T S S T TSV
Sbjct: 344 SSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLT-SANSTTSTSV 402
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 488 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 354
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.33
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 434 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 258
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 257 SCTPSVLS 234
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.33
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 434 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 258
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 257 SCTPSVLS 234
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 446 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLG 282
P+ P + S P + S TS PP + P + P + P+ PPSL +G
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP-SAPPSLPPSAPPSLPMG 442
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = -3
Query: 452 SLPSKPSVLSNSSTGVQPVSRSVSTT-SHPPWCPEATWPRFNVPSACCPTPPPSLKLGLA 276
S P+ P + + S T PV S S PP P + P + + P PPS +
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Query: 275 LTTSSTSCTP 246
L + P
Sbjct: 459 LPAGMPAAPP 468
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 383 STTSHPPWCPE--ATWPRFNVPSACCPTPPP 297
++TS PP P ++ P VPS P PPP
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPP 255
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.0
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = -3
Query: 482 TSYPRM*TRPSLP-SKPSVLSNSS--TGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 312
TS P PS P SKP S ++ V PV + +S+ + P P A P VPS
Sbjct: 983 TSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPK-LSSKAPPVPLPSADAPPIPVPSTAP 1041
Query: 311 PTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPV 180
P P P+ + ++S P + + + S PV
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 576 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 451
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 448 SDGRVHILGYDVTTVQHTASHVLAMTGIAFHHLVGGLEACVCDLGQRKAV 597
S G +LGY ++ A++V+A + + HL+ G D + K +
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESKGL 456
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -3
Query: 443 SKPSVLSNSSTGVQP--VSRSVSTTSHPPWC--PEATWPRFNVPSACCPTPPP 297
S P+ S++GV VS S S PP P A P ++PS P PPP
Sbjct: 141 SAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPP 193
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 392 RSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLS 234
++ S T+ P P ++ FN PSA P P++ + +T TPS S
Sbjct: 453 KAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTT--TPSATS 503
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 452 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 366
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 321 CMLSNTAAIAEAWARLDHKFDLMY 250
C++ A + W RLD+ F LMY
Sbjct: 1336 CVIVEMATGSPPWPRLDNHFSLMY 1359
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 9.4
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -3
Query: 485 VTSYPRM*TRPSLP--SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 312
+T+ R T+P+ P S+ +N + S S+ S P +A +VP +
Sbjct: 498 LTNKARNATQPTQPPVSQVDYSNNLPPNLDTSSTFRSSASPPSAFTKAGNEALSVPLSGA 557
Query: 311 PTPPPSLKLGLALTTSSTSCTPSVLSCTGT 222
S LA SS S +L C GT
Sbjct: 558 RNTAASRPTNLAAGNSSASIVQQLLECGGT 587
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 455 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 360
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 709 AXNVDLTEFQTNXVPYPRIHFPLVT 635
A +V++ E +TN +P HFP T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,875
Number of Sequences: 5004
Number of extensions: 68621
Number of successful extensions: 299
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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