Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_K16
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    29   2.9  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    29   2.9  

>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +1

Query: 580 AMIGRADIEGSKSNVAMNAWLPQASYPLVVTFLAPLAKTLYTKGSIGRAFAVPMRTEHLD 759
           AM  +A  E  K++   N  LP   + +    L PLAK  Y K ++   F   M  E   
Sbjct: 472 AMYEKAKREYEKNHCFPN--LPIFEFNIEYKNLHPLAKAQYGKNNMKEYFLNEMEVEKSR 529

Query: 760 QASFCPF 780
           + + CPF
Sbjct: 530 ECTDCPF 536


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +1

Query: 580 AMIGRADIEGSKSNVAMNAWLPQASYPLVVTFLAPLAKTLYTKGSIGRAFAVPMRTEHLD 759
           AM  +A  E  K++   N  LP   + +    L PLAK  Y K ++   F   M  E   
Sbjct: 533 AMYEKAKREYEKNHCFPN--LPIFEFNIEYKNLHPLAKAQYGKNNMKEYFLNEMEVEKSR 590

Query: 760 QASFCPF 780
           + + CPF
Sbjct: 591 ECTDCPF 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,484,918
Number of Sequences: 27780
Number of extensions: 386046
Number of successful extensions: 1112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)