Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_K08
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   8.6  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 654 PXQXPPXTXXRLXPXPXXXPPPLPXXPPXXSSLS 755
           P   P  T  +  P P   PPP P  PP  ++ S
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTS 254


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = +2

Query: 389  PPXXPXAXXXSXXPTXP*XPXPXXPXXGAXRPPXWDXPXPSXXXPRXP 532
            PP  P +   S  P  P    P  P   +  PP    P PS   P  P
Sbjct: 991  PPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPP---VPLPSADAPPIP 1035


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 327 LRSLISNLSNTCDLTPLPEWSCEQSAW 247
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,884
Number of Sequences: 5004
Number of extensions: 14738
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)