Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_K02
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   282   3e-77
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   282   3e-77
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    30   0.32 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.75 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.0  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    26   5.3  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.0  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  282 bits (692), Expect = 3e-77
 Identities = 132/203 (65%), Positives = 157/203 (77%)
 Frame = -3

Query: 717 KVKWAREHXEKPIPVDSVFAQDEMIDCICVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVA 538
           KV+WAREH EK + + S F Q+EMID I VT+GKG +G T+RW TK+LPRKTH+GLRKVA
Sbjct: 191 KVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVA 250

Query: 537 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 358
           CIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    D K    NAST++D +EK
Sbjct: 251 CIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEK 303

Query: 357 SITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSS 178
            ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+S
Sbjct: 304 RITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTAS 363

Query: 177 KFGHGRFQTPADKAAFMGTLKKD 109
           KFGHGRFQTPA+   F+GTLKKD
Sbjct: 364 KFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  282 bits (692), Expect = 3e-77
 Identities = 132/203 (65%), Positives = 157/203 (77%)
 Frame = -3

Query: 717 KVKWAREHXEKPIPVDSVFAQDEMIDCICVTKGKGYKGVTSRWHTKKLPRKTHKGLRKVA 538
           KV+WAREH EK + + S F Q+EMID I VT+GKG +G T+RW TK+LPRKTH+GLRKVA
Sbjct: 191 KVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVA 250

Query: 537 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 358
           CIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    D K    NAST++D +EK
Sbjct: 251 CIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEK 303

Query: 357 SITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSS 178
            ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+S
Sbjct: 304 RITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTAS 363

Query: 177 KFGHGRFQTPADKAAFMGTLKKD 109
           KFGHGRFQTPA+   F+GTLKKD
Sbjct: 364 KFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
 Frame = -3

Query: 663 FAQDEMIDCICVTKGKGYKGVTSRWHTK--KLPRKTHKGLRKVACIGA-WHPSRVSFTVA 493
           F   + +D   +TKGKG+ GV  RW               R     G    PSRV     
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSRVLPGRK 204

Query: 492 RAGQKGYHHRTEMNKKIYRI 433
            AG  G+  RT  N  ++ +
Sbjct: 205 MAGHMGHRSRTVKNLLVWAV 224


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 400 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 498
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 367 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 489
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 130 HGYTQEGSYSRRSCGYHNPS 71
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = -3

Query: 705 AREHXEKPIP-VDSVFAQDEM----IDCICVTKGKG 613
           A+ H    IP +   FA+ ++    IDCIC TKG G
Sbjct: 54  AKHHRAWIIPLIKQAFAEAKISFKDIDCICFTKGPG 89


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 352 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 480
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 412 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 537
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,155
Number of Sequences: 5004
Number of extensions: 67508
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)