Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_J22
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0629 + 24597370-24597789 33 0.19
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 33 0.26
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 31 1.4
05_02_0120 - 6797954-6798970,6799466-6799951 31 1.4
03_06_0562 + 34732027-34733121 30 2.4
12_02_0905 - 24188563-24189189,24189648-24190577 29 3.2
02_05_0341 - 28115835-28116404 29 3.2
12_02_0909 - 24217980-24218597,24219182-24219640 29 4.2
04_04_0895 - 29168107-29168229,29168617-29170068 29 4.2
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 29 4.2
08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,440... 28 7.3
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 28 7.3
01_06_0176 - 27233553-27234588,27235629-27235768 28 7.3
12_02_0970 + 24939345-24939416,24940689-24941054 28 9.7
12_01_0018 + 132654-133304,133726-134265,134357-134436,134673-13... 28 9.7
11_01_0019 + 135610-136296,136736-137275,137367-137518,137683-13... 28 9.7
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 28 9.7
>02_04_0629 + 24597370-24597789
Length = 139
Score = 33.5 bits (73), Expect = 0.19
Identities = 26/98 (26%), Positives = 44/98 (44%)
Frame = -1
Query: 572 NRTISSVSPAPGTRSRDSRDXEVYCPSGEKCPLANSTVPWAFMQGEIATIMGDELKPKKE 393
+RT++ P PG + RD E CP G + A +T + G +E + ++
Sbjct: 44 SRTVACGRP-PGDGRKARRDGERTCPCGRRRGAA-ATAGRVHLAGPQEPASREEWRGQER 101
Query: 392 RET*SGTWSGRLYLLSLSLAGGEPRHEAARRLRGGTPT 279
R G +G ++++ R E+ARR RG P+
Sbjct: 102 RSRAGGRPAGSRRGSAVAVTPSSGRGESARRARGRRPS 139
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 93 NVNFIRNITGASSDARRAQESPNEVHDAFRRSSGSEIES 209
N+++IR+++GA D +++ PNEV + SS E+ S
Sbjct: 360 NISYIRSVSGAVVDLEESRDYPNEVLVMIKGSSSQEVLS 398
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 93 NVNFIRNITGASSDARRAQESPNEVHD--AFRRSSGSEIESIVRFVERTDIVTVDYLQCY 266
N++F +I D +A E P+ +H+ A R+S V E +V+Y C
Sbjct: 557 NLSFDLDIDVNKFDTYKA-EGPSALHNPSASMRASSVIAMDTVHSAEENSTESVEYHPCD 615
Query: 267 IQDVRRCSAAEPPGGL 314
+ DV + S+A GG+
Sbjct: 616 VDDVHKPSSAVRSGGM 631
>05_02_0120 - 6797954-6798970,6799466-6799951
Length = 500
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 424 IVAISPCMNAHGTVEFARGHFSPLGQYTSXSLL 522
+V + P + A+G VEF R H+ +G + SLL
Sbjct: 52 LVGVLPSLLANGPVEFIRHHYEKMGSVFTVSLL 84
>03_06_0562 + 34732027-34733121
Length = 364
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 584 SAPANRTISSVSPAPGTRSRDSRDXEVYCP 495
SAP ++ ++ ++PAPGT D R V+ P
Sbjct: 49 SAPPDQLVAGLAPAPGTGDGDGRVWYVFTP 78
>12_02_0905 - 24188563-24189189,24189648-24190577
Length = 518
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 168 HDAFRRSSGSEIESIV---RFVERTDIVTVDYLQCYIQDVRRCSAAEP 302
H + + +EI++ V R VE D+ + Y+QC I++ R A P
Sbjct: 334 HPETMKKARAEIDANVGTARLVEEADMANLPYIQCVIKETLRLRTAGP 381
>02_05_0341 - 28115835-28116404
Length = 189
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -3
Query: 627 CTLCQERLEDTHFVQCPSQPHHKFCFPCSRDSIKRQQGX---RGVLSQRREMPPGELDGP 457
C +C ED V+ Q H+F C ++ R VL EMPPGE G
Sbjct: 100 CAICLVEFEDGQAVRVLPQCDHRFHAACIDTWLRAHSSCPSCRRVLVAA-EMPPGERCGR 158
Query: 456 VGIHAG 439
G +G
Sbjct: 159 CGARSG 164
>12_02_0909 - 24217980-24218597,24219182-24219640
Length = 358
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 183 RSSGSEIESIV---RFVERTDIVTVDYLQCYIQDVRRCSAAEPPGGLVPRLSSRE 338
R + EI S+V R ++ D+ + YL+C I + R P LVP +SR+
Sbjct: 182 RKATDEINSVVGMSRLLQEPDLANLPYLRCIITETLRLYPLAP--HLVPHEASRD 234
>04_04_0895 - 29168107-29168229,29168617-29170068
Length = 524
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 494 WDSTPRXPCCLLIESREQGKQ 556
WD +PR CC ++ S ++GK+
Sbjct: 482 WDRSPRRNCCRVLSSPKEGKK 502
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 627 CTLCQERLEDTHFVQCPSQPHHKFCFPCS 541
CT C + + + P+HK CF CS
Sbjct: 10 CTACDKTVHFIDLLTADGVPYHKTCFKCS 38
>08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,
4401725-4401817,4402357-4402551,4402643-4402735,
4403554-4403649,4404186-4404633,4405078-4405745,
4406822-4406884,4408650-4408847,4409265-4409982,
4410447-4410580
Length = 1056
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 125 RSRNVPNEVHVGFGSFSIRHRSGAPAPLTGGIIDL 21
RSR PN H G G S R+ AP+ G D+
Sbjct: 945 RSRQFPNMTHAGPGQKSHVERAAINAPVQGSAADV 979
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 465 DGPVGIHAG*NCYDNGRRTETEEGTRDLERHLVRPTVSVV 346
D P G G + + G T T G + ++ LV PT S +
Sbjct: 120 DDPFGEFMGDDAFFGGNNTHTMTGDQPIQASLVPPTTSTI 159
>01_06_0176 - 27233553-27234588,27235629-27235768
Length = 391
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 144 AQESPNEVHDAFRRSSGSEIESIVRFVERTDIVTVDYLQCYIQDVRRCSAAEPPGG 311
+ S ++ DA E +++ R++ I T DY+ CY D +A GG
Sbjct: 254 SSSSSSQAADAGGGGESEEAKAMCRWLPHLYINTNDYICCYYNDAAAGTATVAAGG 309
>12_02_0970 + 24939345-24939416,24940689-24941054
Length = 145
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 261 CYIQDVRRCSAAEPPGGLVPRLSSRER 341
C+ D RRC + GG+ P SR R
Sbjct: 12 CFFLDPRRCWGGQEEGGVAPGRRSRRR 38
>12_01_0018 +
132654-133304,133726-134265,134357-134436,134673-134949
Length = 515
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 627 CTLCQERLEDTHFVQCPSQPHHKFCFPCSRDSIK 526
CT+C E D + H+FCF C ++ +K
Sbjct: 287 CTICLEDT-DVSKIHAVEGCAHRFCFSCMKERVK 319
>11_01_0019 +
135610-136296,136736-137275,137367-137518,137683-137959
Length = 551
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 627 CTLCQERLEDTHFVQCPSQPHHKFCFPCSRDSIK 526
CT+C E D + H+FCF C ++ +K
Sbjct: 299 CTICLEDT-DVSKIHAVEGCAHRFCFSCMKEHVK 331
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 627 CTLCQERLEDTHFVQCPSQPHHKFCFPCS 541
C C + + + S P+HK CF CS
Sbjct: 10 CNACDKTVHFIDLLTADSIPYHKSCFRCS 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,061,447
Number of Sequences: 37544
Number of extensions: 449185
Number of successful extensions: 1609
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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