Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_J22
(785 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 71 9e-13
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 71 9e-13
U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 31 0.71
U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 31 0.71
Z98866-24|CAB11568.2| 366|Caenorhabditis elegans Hypothetical p... 30 1.6
U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell l... 30 1.6
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 29 3.8
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 28 6.6
AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical ... 28 8.7
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 70.9 bits (166), Expect = 9e-13
Identities = 29/36 (80%), Positives = 30/36 (83%)
Frame = -3
Query: 627 CTLCQERLEDTHFVQCPSQPHHKFCFPCSRDSIKRQ 520
CTLC ERLEDTHFVQCP+ HKFCFPCSR SIK Q
Sbjct: 271 CTLCNERLEDTHFVQCPTVSIHKFCFPCSRSSIKDQ 306
Score = 64.5 bits (150), Expect = 8e-11
Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = -1
Query: 518 RDXEVYCPSGEKCPLANSTVPWAFMQGEIATIMGDELKP-KKERE 387
+ ++YCPSG+KCPL S +PWAFMQGEIA I+GDE K+ RE
Sbjct: 308 KSSDMYCPSGDKCPLVGSAMPWAFMQGEIAQILGDEYDEFKRTRE 352
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 70.9 bits (166), Expect = 9e-13
Identities = 29/36 (80%), Positives = 30/36 (83%)
Frame = -3
Query: 627 CTLCQERLEDTHFVQCPSQPHHKFCFPCSRDSIKRQ 520
CTLC ERLEDTHFVQCP+ HKFCFPCSR SIK Q
Sbjct: 298 CTLCNERLEDTHFVQCPTVSIHKFCFPCSRSSIKDQ 333
Score = 64.5 bits (150), Expect = 8e-11
Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = -1
Query: 518 RDXEVYCPSGEKCPLANSTVPWAFMQGEIATIMGDELKP-KKERE 387
+ ++YCPSG+KCPL S +PWAFMQGEIA I+GDE K+ RE
Sbjct: 335 KSSDMYCPSGDKCPLVGSAMPWAFMQGEIAQILGDEYDEFKRTRE 379
>U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative
transcription factor LIM-4 protein.
Length = 355
Score = 31.5 bits (68), Expect = 0.71
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 627 CTLCQERLEDTHFVQCPSQPHHKFCFPCS 541
CT CQ +++D F+ + +H+ C CS
Sbjct: 98 CTQCQHQIQDKFFLSIDGRNYHENCLQCS 126
>U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family
protein 4 protein.
Length = 355
Score = 31.5 bits (68), Expect = 0.71
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 627 CTLCQERLEDTHFVQCPSQPHHKFCFPCS 541
CT CQ +++D F+ + +H+ C CS
Sbjct: 98 CTQCQHQIQDKFFLSIDGRNYHENCLQCS 126
>Z98866-24|CAB11568.2| 366|Caenorhabditis elegans Hypothetical
protein Y49E10.25 protein.
Length = 366
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 602 KIRISCSAPANRTISSVSPA-PGTRSRDSRDXEVYCPSGEKCPLANSTVPW 453
KI +S IS V P PG SR + EVYCP ++C + + W
Sbjct: 4 KIHLSIFPLLILCISHVIPTTPGLCSRCIQRGEVYCPMFDRCGILPFCIKW 54
>U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell
lineage protein 32 protein.
Length = 142
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 250 STVTISVRSTNLTIDSISLPDDRRNASWTSFGDSCARRASDDAPVMFRMK 101
ST+T ++S N ++DS + PD N C RR +P + RM+
Sbjct: 25 STMTTPLQSPNFSLDSPNYPDSLSNGGGKDDKKKC-RRYKTPSPQLLRMR 73
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 95 RELHSEHYGSVVGRPPRTRITKRSPRCISPIVGK*NRIDRE 217
R+ S+ GS+ G PP R RC +P++ K +D E
Sbjct: 234 RQSSSQSIGSLAGIPPARRAPDIPKRCSNPLIRKAMGMDTE 274
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 100 TSFGTLRERRRTPAAHKNHQTKSTMHFADRREVKSN 207
TSFG R + AH+ HQT + H ++ S+
Sbjct: 220 TSFGMSRSKSMGSVAHEAHQTSNNQHSSETHGTASS 255
>AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical
protein Y75B8A.7 protein.
Length = 648
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 108 RNITGASSDARRAQESPNEVHDAFRRSSG 194
+N TG S+D PNE H+A + G
Sbjct: 454 QNSTGNSADGAAGATKPNEAHEAIKSKMG 482
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,462
Number of Sequences: 27780
Number of extensions: 350734
Number of successful extensions: 1069
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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