Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_J19
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 30 1.8
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 30 2.4
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.2
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 29 4.2
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.5
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.5
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.5
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.7
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 579 PGVKPPXSSEXPSXYXTPXSXGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPP 400
PG PP +S PS P + SPP SQ++ + +P PS SPP
Sbjct: 1152 PGSSPPPASPPPSTPSAPPTNSSGSAPSPP-----SPSQSAPPANTGGGGSPPPSHGSPP 1206
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 29.9 bits (64), Expect = 2.4
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 3/106 (2%)
Frame = -1
Query: 705 PXPXXXGXXNXXXXXXXSXHQPP--PXXTXXSINPXTPX*KEFAPGVKPPXSSEXPSXYX 532
P P N S + PP P + + P P + P + PP +S P
Sbjct: 169 PAPSVARNPNLPIVQPPSVNNPPSRPIGSGNGVPPYPPPQRSL-PAI-PPSTSGVPRESV 226
Query: 531 TPXSXGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPSSN-SPPH 397
P V+PP QA S HS +P +N SPPH
Sbjct: 227 KPP-------VAPPIIAQAPRQQALAPSSDHSNGNSVPPANTSPPH 265
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 80 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/55 (38%), Positives = 24/55 (43%)
Frame = -1
Query: 501 VSPPYFQVNDESQASRLISRHSTHTPLPSSNSPPH*RCRHGHKPSHHRL*SQNRR 337
+SPP Q S+A R S PLP+ P H R PS RL S RR
Sbjct: 1 MSPPPPQRPSPSRAGRANLFSSPPPPLPNCYDPKHRRPAPPPLPSARRLPSNRRR 55
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 72 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = -1
Query: 642 PPPXXTXXSINPXTPX*KEFAPGVKPPXSSEXPSXYXTPXSXGMXKGVSPP 490
PPP + P P + AP PP P P KG SPP
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP 365
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 239 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,156,838
Number of Sequences: 37544
Number of extensions: 337127
Number of successful extensions: 852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -