Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_J17
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 131 5e-31
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 33 0.19
02_01_0684 - 5071994-5072134,5072240-5072365,5072452-5072608,507... 28 7.3
01_06_1117 - 34633311-34634030,34634434-34634873,34635320-346353... 28 7.3
11_04_0354 + 16697571-16700256,16700335-16700759 28 9.6
07_03_1359 - 25985936-25986083,25986424-25986782,25987026-259871... 28 9.6
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033 28 9.6
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 131 bits (317), Expect = 5e-31
Identities = 63/89 (70%), Positives = 68/89 (76%)
Frame = -3
Query: 659 TTTMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEY 480
T MEGNTGHPVF T YGKI VNIC+GRHH LNW+ FG NGAEIVFNPSAT+ GE SE
Sbjct: 236 TYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSATV-GE-LSEP 293
Query: 479 MWNVEARNAAITNCYFTAAINRVGXRGVP 393
MW +EARNAAI N YF +INRVG P
Sbjct: 294 MWPIEARNAAIANSYFVGSINRVGTEVFP 322
Score = 110 bits (264), Expect = 1e-24
Identities = 52/91 (57%), Positives = 64/91 (70%)
Frame = -1
Query: 403 EEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIR 224
E FPN FTS DGKP H D G FYGSS+F PD P LSR RDGL+I+ +DLNL RQI+
Sbjct: 319 EVFPNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIK 378
Query: 223 DRRCYYMTQRLDMYVNSLSKVLELDYKPQVV 131
D+ + MT R D Y + LS+ L+ D+KPQV+
Sbjct: 379 DKWGFRMTARYDTYASLLSEYLKPDFKPQVI 409
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -1
Query: 745 AVVISDXGNVIGKHRKNHI 689
AVVI + GN+IG HRKNHI
Sbjct: 208 AVVIGNHGNIIGIHRKNHI 226
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 780 RDEKHSDILXTLRLSLVTPET*SGSIARTTFPRVGDFNESNYY 652
RD H +I+ + + G + PRVGDFNES YY
Sbjct: 196 RDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYY 238
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 33.5 bits (73), Expect = 0.19
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = -3
Query: 644 GNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEG-----GSEY 480
G+TG F T+Y I V IC+ + GAEI+F P+A I E S
Sbjct: 141 GDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA-IGSEPQDNNLDSRE 199
Query: 479 MWNVEARNAAITNCYFTAAINRVGXRGV 396
W + A N A NR+G V
Sbjct: 200 HWKRVMQGHAGANLVPLVASNRIGRETV 227
>02_01_0684 -
5071994-5072134,5072240-5072365,5072452-5072608,
5073115-5073224,5073309-5073456,5073581-5073735,
5074144-5074249,5074337-5074436,5074775-5074880,
5075013-5075444
Length = 526
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 460 GTQLSRTATSQRPSTESAXEEFPNEFTSADGKPAHKDL 347
G Q +R+A+ RP+T A +E +F DG+P +L
Sbjct: 120 GGQSNRSASPLRPATARAVKEVIPQFYFQDGRPPTYEL 157
>01_06_1117 -
34633311-34634030,34634434-34634873,34635320-34635370,
34635522-34635642
Length = 443
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 351 SLCAGFPSAEVNSFGNSSXADSVDGRCEVAV 443
SLC ++E F +SS A S DG CE +
Sbjct: 85 SLCLCHSTSEKAGFEHSSCASSGDGNCEAGI 115
>11_04_0354 + 16697571-16700256,16700335-16700759
Length = 1036
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 197 LGHVITTSVSDLSVQVQVHGRD*QAVSGAGQTGAPNAVG 313
LG V+ TSVS+LS Q+Q+ +SG G N VG
Sbjct: 331 LGGVLPTSVSNLSAQLQLLYVGFNKISGNIPFGISNLVG 369
>07_03_1359 -
25985936-25986083,25986424-25986782,25987026-25987153,
25987609-25987727,25988253-25988320
Length = 273
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = -1
Query: 421 STESAXEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLN 242
+T + FP TS D +P+ + G+ S + P + +R+RD +AA + +
Sbjct: 190 ATPRELQLFPESATSEDSEPSQEH-GI---SDHVTRPQPSKDAWQNRSRDAPTVAARESS 245
Query: 241 LNRQI 227
LNR+I
Sbjct: 246 LNRKI 250
>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
Length = 143
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 257 GRGLEPEQTDQRQTLLLHDPTPGHVREQSQQSTRAGLQ 144
G+G EP+ D ++ L ++D PG E Q S+ AGL+
Sbjct: 89 GKGHEPDWRDLQELLRIYD--PGTSTECKQASSGAGLR 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,825,558
Number of Sequences: 37544
Number of extensions: 414481
Number of successful extensions: 1308
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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