Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_J16
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   159   3e-40
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   159   3e-40
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    28   1.3  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    28   1.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   3.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  159 bits (387), Expect = 3e-40
 Identities = 85/161 (52%), Positives = 103/161 (63%)
 Frame = -3

Query: 592 GTQRSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKR 413
           GT+R  PRKTH+GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G   +
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292

Query: 412 MAKLLKTMHLLSMICLRNPLHRWEVSPIMVK*TTTL**XKGCCMGPKKRIITLRKSLRVH 233
            A          +  +   +    V    V          G   GP KR++TLRKSL  H
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVM-------LNGATPGPVKRVLTLRKSLLTH 345

Query: 232 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 110
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 32/52 (61%), Positives = 41/52 (78%)
 Frame = -1

Query: 774 QKKAHIMEIQXXRGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 619
           QKKAH+MEIQ   G++ DKV+WAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
 Frame = -2

Query: 626 KGKGYKGVTSRWHTKKLPP*DTQGS*E-SCLH-WSLASF*GVVHCSSCWSERLSSPY*NE 453
           +GKG +G T+RW TK+LP    +G  + +C+  W  A+    V  +       ++ Y + 
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAG------NAGYMHR 275

Query: 452 -QENLSYWTRNPQKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
            Q N   +      D K    NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 276 TQLNSKIYRIGAGDDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  159 bits (387), Expect = 3e-40
 Identities = 85/161 (52%), Positives = 103/161 (63%)
 Frame = -3

Query: 592 GTQRSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKR 413
           GT+R  PRKTH+GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G   +
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292

Query: 412 MAKLLKTMHLLSMICLRNPLHRWEVSPIMVK*TTTL**XKGCCMGPKKRIITLRKSLRVH 233
            A          +  +   +    V    V          G   GP KR++TLRKSL  H
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVM-------LNGATPGPVKRVLTLRKSLLTH 345

Query: 232 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 110
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 32/52 (61%), Positives = 41/52 (78%)
 Frame = -1

Query: 774 QKKAHIMEIQXXRGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 619
           QKKAH+MEIQ   G++ DKV+WAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
 Frame = -2

Query: 626 KGKGYKGVTSRWHTKKLPP*DTQGS*E-SCLH-WSLASF*GVVHCSSCWSERLSSPY*NE 453
           +GKG +G T+RW TK+LP    +G  + +C+  W  A+    V  +       ++ Y + 
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAG------NAGYMHR 275

Query: 452 -QENLSYWTRNPQKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
            Q N   +      D K    NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 276 TQLNSKIYRIGAGDDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330


>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 592 QREVTPLYPLPLGDTNAVNHFILGKHRIDRDRFLQMFSGPFHFV 723
           Q  ++ L   P G T +V   + G+  +D ++  Q +S  FH V
Sbjct: 62  QHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV 105


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -1

Query: 174 SVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRENKHLTMQKKK 7
           SV+ +SR+R   +HS   +RR+   ++  L   Q+   AA    RE +HLT+ +KK
Sbjct: 2   SVVNESRKRRRLIHSEKETRRLDLGEEDDLELFQKE--AAWRRSREYEHLTVLEKK 55


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 198 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 85
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 131 HGYTQEGSYSRRSCGYHNPS 72
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,477,410
Number of Sequences: 5004
Number of extensions: 75667
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)