Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_J16
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 174 6e-44
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 167 9e-42
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 31 1.0
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 30 1.8
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 30 2.4
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 29 3.2
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 5.5
01_01_0760 + 5860893-5861065,5861549-5862443 28 7.3
11_01_0710 - 5830475-5830595,5831498-5834124 28 9.6
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 174 bits (424), Expect = 6e-44
Identities = 89/153 (58%), Positives = 105/153 (68%)
Frame = -3
Query: 574 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKRMAKLLK 395
PRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG+ + A +
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTE 301
Query: 394 TMHLLSMICLRNPLHRWEVSPIMVK*TTTL**XKGCCMGPKKRIITLRKSLRVHTKRAAL 215
I + V VK + KGCC+GPKKR++TLR+SL T R AL
Sbjct: 302 FDRTEKDITPMGGFPHYGV----VKGDYLM--IKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 214 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 116
E+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = -1
Query: 774 QKKAHIMEIQXXRGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 619
QKKAH+MEIQ GTI DKV + + EK IPVD+VF +DEMID IGVT+G+
Sbjct: 176 QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGK 227
Score = 61.7 bits (143), Expect = 6e-10
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Frame = -2
Query: 626 KGKGYKGVTSRWHTKKLPP*DTQGS*E-SCLHWSLASF*GVVHCSSCWSERLSSPY*NEQ 450
KGKGY+GV +RW +LP +G + +C+ G H + S ++ N
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACI--------GAWHPARV-SYTVARAGQNGY 275
Query: 449 ENLSYWTRNPQKDGKVIKNN--ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
+ + + K GK + + A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 276 HHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 167 bits (406), Expect = 9e-42
Identities = 85/145 (58%), Positives = 101/145 (69%)
Frame = -3
Query: 574 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKRMAKLLK 395
PRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG+ + A +
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTE 301
Query: 394 TMHLLSMICLRNPLHRWEVSPIMVK*TTTL**XKGCCMGPKKRIITLRKSLRVHTKRAAL 215
I + V VK + KGCC+GPKKR++TLR+SL T R AL
Sbjct: 302 FDRTEKDITPMGGFPHYGV----VKGDYLM--IKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 214 EKINLKFIDTSSKFGHGRFQTPADK 140
E+I LKFIDTSSKFGHGRFQT +K
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = -1
Query: 774 QKKAHIMEIQXXRGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 619
QKKAH+MEIQ GTI DKV + + EK IPVD+VF +DEMID IGVT+G+
Sbjct: 176 QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGK 227
Score = 61.7 bits (143), Expect = 6e-10
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Frame = -2
Query: 626 KGKGYKGVTSRWHTKKLPP*DTQGS*E-SCLHWSLASF*GVVHCSSCWSERLSSPY*NEQ 450
KGKGY+GV +RW +LP +G + +C+ G H + S ++ N
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACI--------GAWHPARV-SYTVARAGQNGY 275
Query: 449 ENLSYWTRNPQKDGKVIKNN--ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
+ + + K GK + + A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 276 HHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -1
Query: 714 KWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTRVLGKLPA 535
KWA+ H++ + + S FA+ E+ + G R++ FS ++P+R RV +P
Sbjct: 13 KWAKAHIDLVVGLQSRFARLEL------SNGLRLRLLRFSFPSPSSSPLRWVRVGNLVPL 66
Query: 534 LE 529
E
Sbjct: 67 NE 68
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 681 PVDSVFAQDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTRVLGK 544
P +F + CIG G +I R + H +++PVR+ LGK
Sbjct: 153 PTIPIFGVCMGLQCIGEAFGGKIIRAPSGVMHGKSSPVRYDEELGK 198
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 180 PSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 37
PS V+ +RRR+ R +S + R + F+K P P+R ++ ++E
Sbjct: 292 PSDVVDSARRRMARRNSLGNERTVTFSK----PSPERNSVSSTRSIKE 335
>01_06_0343 +
28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 649 D*LHWCHPRAKDTKVSLLVGTQRSYPRKTHKGLRKVACIGAWHPSRVSFTVAR 491
D L +PR + ++VS ++RS PR R GAW+P SFT+ R
Sbjct: 565 DGLQCAYPRRRSSRVSAT--SRRSKPR------RSSVSAGAWNPRSPSFTIKR 609
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 165 VDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 37
V S RL RL W + + LRL P+R C A+ VV E
Sbjct: 11 VSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCAGAVRVVAE 53
>01_01_0760 + 5860893-5861065,5861549-5862443
Length = 355
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 258 VMIRFLGPMQQPLXHHKVVVYFTIMG-ETSHRCNGFLRQIILSRCIVFNNFAILLW 422
V+ + GP PL HH+V F G E S +G R I+ + I+ +N LLW
Sbjct: 124 VIALYTGPTISPLIHHRV---FAGGGHEASASGSGRTRWIVGTVLILLSNVTWLLW 176
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 641 QSIISSWANTESTGIGFSRCSLAHFTLS-SMVPRXXW 748
+S+ISSW + TG S CS+ + + +P W
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQW 686
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,477,552
Number of Sequences: 37544
Number of extensions: 530290
Number of successful extensions: 1378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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