Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_J14
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   4.0  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    26   6.9  
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    25   9.2  

>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 599 RPPFNYTTGRLSPEKSQWISNGQHRGLREA 510
           R PF+    RLSP     +SN +H   R A
Sbjct: 246 RKPFSKIPNRLSPSTQPLLSNSRHSSFRLA 275


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 262 RLRTYPHARHVRAEPPAD 209
           RLR YP  +H+  +PP++
Sbjct: 105 RLRKYPGQKHINGKPPSN 122


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 554 SQWISNGQHRGLREAPGVKLEXEESGH 474
           S +ISNG  +   E P ++   EES H
Sbjct: 78  SAFISNGHQKDTLENPAIESSYEESEH 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,334
Number of Sequences: 5004
Number of extensions: 31005
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)