Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_J14
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    28   8.6  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   8.6  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -3

Query: 295 GARGSGGFVALRLRTYPHARHVRAEPPADLPRGPDPADGP 176
           GA G G  V    +T P  +   A PP   P GPD   GP
Sbjct: 133 GAPGKGAAVPCEAKTPPPCKPCPAGPPG--PPGPDGPAGP 170


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 442 DSEHDQYVEFTNSDLEADAAQSTVPFID 359
           D  HD+   FTN  L       T PF+D
Sbjct: 40  DKGHDELKAFTNEQLNVFLTDHTAPFVD 67


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 602  LISKCRCAPSIRXLTPVRTCPXGR 673
            L  +CRC P    +T  + CP GR
Sbjct: 1397 LTGQCRCLPGFTGMTCNQVCPEGR 1420


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 602  LISKCRCAPSIRXLTPVRTCPXGR 673
            L  +CRC P    +T  + CP GR
Sbjct: 1397 LTGQCRCLPGFTGMTCNQVCPEGR 1420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,274,040
Number of Sequences: 27780
Number of extensions: 191833
Number of successful extensions: 474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)