Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_J09
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857... 33 0.26
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 32 0.60
05_02_0070 - 6327352-6327582,6327684-6327944 30 2.4
03_02_0711 - 10591738-10591772,10592260-10592447,10593730-105938... 29 3.2
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710... 29 4.2
10_07_0014 + 11800251-11800643,11800721-11801288,11801694-118017... 29 5.6
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 29 5.6
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 29 5.6
07_01_1164 - 11016314-11017688,11019144-11019181 28 7.4
04_04_1038 - 30319139-30319357,30319544-30319714,30319803-303198... 28 7.4
10_01_0273 - 2891910-2893459,2893554-2893665 28 9.7
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 9.7
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134... 28 9.7
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 28 9.7
01_01_0869 + 6786136-6788577 28 9.7
>05_04_0356 -
20584212-20584628,20584798-20584899,20585658-20585705,
20586046-20586186,20586315-20586437,20587166-20587252,
20587630-20587742,20587844-20587943,20588217-20588601,
20588841-20588917,20589501-20589593,20589697-20589774,
20590923-20591246
Length = 695
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = -3
Query: 421 MSQTNDKKGISENGRAEESGLVHQDSVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANP-- 248
M+ T+ + NG ++ S V + + S+ N+ +M KRK+ S+ + NP
Sbjct: 592 MTSTHTMYPVVNNGNSQSSRSVDKVNEMSVGAGSDGNRSSTSMKKRKID-SEDRQVNPPK 650
Query: 247 STSSFSRHGSQ-ETFSRRQSNAGPIRNYSTSSLAYIST 137
+T+ HG + + ++R A + N + LA S+
Sbjct: 651 ATAELHHHGIEIQKPAKRADEATKVSNLPQTLLAIPSS 688
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.9 bits (69), Expect = 0.60
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = -3
Query: 358 VHQDSVPSIAPSQSN-NQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSNAG 182
V+ + P P+ S + P+ + SYS +P +PS S S S S S
Sbjct: 1675 VYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSP-TSPSYSPTSPSYSYSPTSPSYSPTS 1733
Query: 181 PIRNYSTSSLAYISTPFHGSTLSAFETPNEFASQFSLKSVAESVTEAAY 35
P NYS +S +Y T S S +P + +S S + S T +AY
Sbjct: 1734 PSYNYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSSAY 1780
>05_02_0070 - 6327352-6327582,6327684-6327944
Length = 163
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 439 LVPLLVPLAGRPEDSPPPGFPCTS*PCALRQAGTGEQPPKRSALF 573
+ L P+A P +PP P TS P T +QP R ++
Sbjct: 1 MASLPAPIASTPGSTPPSSLPSTSPPPPPAANATEDQPSSRQLVY 45
>03_02_0711 -
10591738-10591772,10592260-10592447,10593730-10593872,
10593973-10594098,10594187-10594294,10594401-10594618,
10594719-10595208
Length = 435
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 355 HQDSVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTS 239
H + PS++P ++ N+L+ + R+L + KAN S S
Sbjct: 338 HSSTPPSLSPKKNQNKLRSLLFGRRLGRNFPSKANSSPS 376
>01_01_0903 -
7103091-7103120,7104092-7104651,7105208-7105328,
7105545-7106567
Length = 577
Score = 29.1 bits (62), Expect = 4.2
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Frame = -3
Query: 346 SVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSNAGPIRNY 167
S+PS AP QS P++ + + P N +T F + S +T S ++
Sbjct: 125 SLPSCAPGQSEKSKSPSLVAKLMGLDGLPTHNSNT--FKKDESMKTVSSPRALFDIEMPK 182
Query: 166 STSSLAYISTPF-HGSTLSAFETP--NEFASQFSL---KSVAESVTEAA 38
+ A++S+P+ S +S +++ NE S ++ K + + T AA
Sbjct: 183 VQQNDAHMSSPYSRKSNVSLYDSTVVNEIGSMKTIRREKGIEQPQTRAA 231
>10_07_0014 +
11800251-11800643,11800721-11801288,11801694-11801729,
11802908-11802911,11804142-11805108
Length = 655
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -3
Query: 349 DSVPSIAP--SQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQ 194
D++ ++A +S N LK + K ++ +S+ K P +FSR ++ET +Q
Sbjct: 544 DAIHTLATFDGESANDLKIPLVKLRIMFSEALKLKPVRLAFSRDWNEETHITKQ 597
>02_04_0206 +
20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 406 DKKGISENGRAEESGLVHQDSVPSIAPS 323
+K + N R E S +H+DSVPSI+ S
Sbjct: 393 EKDELLTNTRGEFSSSIHEDSVPSISVS 420
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -3
Query: 367 SGLVHQDSVPS---IAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRR 197
+ ++H + PS + Q+ ++K ++ +Y +T +A+ S SRH E+FS
Sbjct: 115 TNIIHTITTPSESLLKELQTLEEMKQQCDMKRDAY-ETMRASYSDKGGSRHSKTESFSTE 173
Query: 196 QSNAGPIRNYSTSSL 152
Q +A + S+L
Sbjct: 174 QLDASFLEYQEDSAL 188
>07_01_1164 - 11016314-11017688,11019144-11019181
Length = 470
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 415 ATFRLRQSLVPLLVPLAGRPEDSPP 489
A F +++S+VP+ +PL+ RP +S P
Sbjct: 435 AYFAVQKSIVPVALPLSPRPTNSTP 459
>04_04_1038 -
30319139-30319357,30319544-30319714,30319803-30319850,
30319978-30320166
Length = 208
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 379 CRFPICPFYRSSATFRLRQSLVPLLVPLAG---RPEDSPPP 492
CR P+CP S+AT R + +P A P+D P P
Sbjct: 28 CRSPLCPLPVSAATAGSRLAYIPRASAAANPHPDPQDEPEP 68
>10_01_0273 - 2891910-2893459,2893554-2893665
Length = 553
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 259 WAFSSTTTSVWTYSASVGYLIGTARCWA 342
W + +TT + +VG+ +G A CWA
Sbjct: 203 WGYVISTTLLSYVDENVGWTVGFAACWA 230
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +1
Query: 352 GGRVHSPLPCRFPICPFYRSSATFRLRQSLVPLLVPLAGRPEDSPPP 492
GG S R PI P S LR VP P A RP PP
Sbjct: 707 GGLSLSYTTPRGPIAPLSLRSPAPHLRARRVPTAPPAAARPRAPTPP 753
>05_07_0344 +
29411767-29411961,29412692-29412741,29413295-29413430,
29413931-29414032,29414153-29414380,29414460-29414544,
29414648-29414730,29414854-29414945,29415048-29415141
Length = 354
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -2
Query: 281 VVVLENAQSESEHVLVQQTRLAGNLQQEAEQRRTDQELFDVQLSLHIHPFPRFDSV 114
VVVL+N + SE +++ LAG+ + R+ D L D Q I RF++V
Sbjct: 33 VVVLDNLDNASELAILRVRELAGHNANNLDFRKVD--LRDKQALDQIFSSQRFEAV 86
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 27.9 bits (59), Expect = 9.7
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = -3
Query: 340 PSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSN-AGPIRNYS 164
PSI+PS S + L +S + S K + ++ SFS S + S R SN P R
Sbjct: 398 PSISPSSSVDSLSSVVSGASTA-STVGKMSHTSESFSTRSSSLSPSLRNSNDHAPTR--- 453
Query: 163 TSSLAYISTPFHGSTLSAFETPNEFASQFSLKSVAESV 50
A T GS S P F KS+ + +
Sbjct: 454 ----ADADTQGKGSKPSGLRMPTPKIGYFDAKSIDQQI 487
>01_01_0869 + 6786136-6788577
Length = 813
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 246 LGFALGVFEYDNFRLDIFGFSWLFDWDGAMLGTLSWWTSPLSSA 377
+G + V + L++FG S DGA L WW+SP SS+
Sbjct: 114 IGDRVYVVDLPRAALELFGDSLYIKEDGASL----WWSSPSSSS 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,231,023
Number of Sequences: 37544
Number of extensions: 436588
Number of successful extensions: 1772
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1771
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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