Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_J03
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.34
12_01_0075 + 622704-622937,623022-623213,623285-623450,624510-62... 31 1.0
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
07_03_0846 - 21983581-21986055 29 3.2
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.2
02_04_0316 - 21978330-21979397 29 3.2
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.6
01_06_0695 - 31292622-31293317 28 7.4
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 7.4
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 28 9.8
08_02_1485 - 27466761-27467753 28 9.8
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 9.8
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.8
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 77 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 205
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>12_01_0075 +
622704-622937,623022-623213,623285-623450,624510-624901
Length = 327
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = -1
Query: 417 ALGRAAGGAKPPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRE 238
+L A PP++GL N + A+ A S KDM+ + + G +C T+ +H E
Sbjct: 161 SLSGANNNIPPPTSGLA-NLTSLFAAQALSQKDMVALSGSHTIGQARC--TNFRAHIYNE 217
Query: 237 TRRRSPFGSRR 205
T S F RR
Sbjct: 218 TNIDSGFAMRR 228
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 345 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 211
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 203 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 352
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 432 GHLVHALGR-AAGGAKPPSAGLCLNASKAEASLA 334
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>02_04_0316 - 21978330-21979397
Length = 355
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 477 RCDSNTAQYERNRSFGHLVHALGRAAGGAKPPSAGLCLNASKAEASLAESG 325
RC T +++ FGHL G A+ P+ G+ A++A S+ E G
Sbjct: 261 RCSCGTTFSRKDKLFGHLALFEGHTPAIAE-PNKGVATAAAEASISMMEEG 310
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -1
Query: 492 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKPPSAGLCLNA-----SKAEASLAES 328
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 327 GKDMLTVEPRESGGSK 280
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 29 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 163
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 7.4
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Frame = +2
Query: 80 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR--RVSR-F 247
S +PR+ R YS R R+ RD+R ++++ S D R P G R R R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPRDSRSPRGS 202
Query: 248 ECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGGFAPPAARPS 415
++R K + RGS P R AS +P PA R S
Sbjct: 203 PRDSRSPKGSPRDTQSPRGSPRDSRSP--RRSASPPNGRNRSPTPNASRSPAPRDS 256
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = -1
Query: 420 HALGRAAGGAKPPSAGLCLNASKAEASLA 334
HAL RAAG A PP+A A KA AS+A
Sbjct: 120 HALRRAAGSAGPPAARPV--ARKAAASVA 146
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 287 PPDSRGSTVSISLPDSARLASALEAFRHNPADGGFAPPAARP 412
PP + G +S +P A LA++L + NPA P + P
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPASPPPPPTSKLP 80
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 23 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 202
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 203 D 205
+
Sbjct: 791 E 791
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 354 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 181
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 180 TRASR 166
TRA+R
Sbjct: 64 TRAAR 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,270,010
Number of Sequences: 37544
Number of extensions: 495463
Number of successful extensions: 1527
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -