Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_J02
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    33   0.061
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    29   0.76 
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    29   0.76 
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   3.0  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   5.3  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   9.3  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
 Frame = -3

Query: 620 SYAGXXVDPGGENLYIIGGWAGGGQPEKSIEV-------FGC*RQMDRGPSPQRGSIAML 462
           S+A      GG+ +YI GG A   QP+  + V       F   R +   PSP+ G  ++L
Sbjct: 82  SHASHLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHASIL 141

Query: 461 WSVVGGIFVGTGRL 420
              +G  F+  G L
Sbjct: 142 ---IGNAFIVFGGL 152


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 189 ALAWGWPWWEAWCTRWEG 136
           A+  G  WWEAW T W G
Sbjct: 79  AVESGLSWWEAWITVWVG 96


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 574 SSAXGPEGVNLKRVLKYSAAEDKWTEAPPLNAGRSQCSGVWW 449
           SS+ GPE   L  + +Y+AA+  W     LN  +   +  +W
Sbjct: 190 SSSIGPEEATLSYMTRYNAAD--WIATAHLNGSQGDVTATFW 229


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 189 ALAWGWPWWEAWCTRWEG 136
           A+  G  WWEAW   W G
Sbjct: 81  AIELGLNWWEAWICVWVG 98


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 305 PHAAPNGAPGCRQGGTGAPRLAPI 376
           P AAP  APG   GG   P +  +
Sbjct: 623 PGAAPGAAPGAAPGGDNGPEVEEV 646


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -3

Query: 590 GENL--YIIGGWAGGGQPEKSIEVFGC*RQMDRGPSPQRGSIAMLWSVVGG 444
           GE+L   I+GG+ G G+    I  F C  +MD  P            V GG
Sbjct: 484 GEDLDCLILGGYFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGG 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,536
Number of Sequences: 5004
Number of extensions: 52282
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)