Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_J02
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.80 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 152 HHASHHGQPHASAGFPHIRPSFPSTV 229
           HH SH   PH     P    S+P+ +
Sbjct: 432 HHHSHAATPHHQHSTPLAHSSYPAAI 457


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -1

Query: 439 LWALGGCDAWHCLSSTETLTINGGQSWSPGPPLPTARRSVGGCVWGSRLISAGGSDGAAS 260
           L  L G    H LSS+     + G   +    L + RRSV  C  G    +A  +   AS
Sbjct: 134 LHGLHGLHGLHGLSSSAPTGSSCGPGAAAAAALLSKRRSVSECSLG----TASSTSSTAS 189

Query: 259 LRRTD 245
            R +D
Sbjct: 190 SRNSD 194


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 140 SHRVHHASHH 169
           +H VHHA+HH
Sbjct: 278 NHHVHHANHH 287


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 367 GPHLWSESQWTTSSAMRHSLPVPTKIPPTTLQSI 468
           G HL    +   S     SLP P    PTT+Q +
Sbjct: 137 GNHLPFHEKLVESFPRGGSLPTPVTPTPTTVQQL 170


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +3

Query: 246  SVLRSEAAPSEPPAEM---SLDPHT 311
            +++ +E APS PP  +    LD HT
Sbjct: 968  TIITAEEAPSGPPTSIRVDDLDQHT 992


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 481 R*GEGPLSICLQQPNTSILFS 543
           R GE P+  C    + SILFS
Sbjct: 408 RNGENPIDTCEMFDSVSILFS 428


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 376 LWSESQWTTSSAMRHSLPVPTK 441
           L+S    + ++ +RHS PVP K
Sbjct: 384 LYSVLPISVANELRHSRPVPAK 405


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 376 LWSESQWTTSSAMRHSLPVPTK 441
           L+S    + ++ +RHS PVP K
Sbjct: 384 LYSVLPISVANELRHSRPVPAK 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,014
Number of Sequences: 438
Number of extensions: 4492
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)