Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_I22
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    26   5.1  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.1  

>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 149 APPFKPKRITASRQK*AGRWYLPVRTHKRSSTTSNYANY 265
           APP    R +      AG   +PV T KR + TS+ ANY
Sbjct: 75  APPSLRNRSSVYLPTPAGPPQIPVNTGKRYTLTSSSANY 113


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 695 DRXTQXTLHPSRRPPNAGPAAASNMTAGSLGRRAKSPIDSAAXH 564
           DR ++  LH S  P N     A ++  G   RRA  P ++   H
Sbjct: 137 DRESRACLHRSEFPKNPHAFLAQDLPHGLPHRRAALPCEALGFH 180


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 337 EYV-FH*KNWYPPAGFEHRCIARYECTGRLILXATTTLN 450
           EYV  H KN  PP   +H+CI  Y+  G ++  + T  N
Sbjct: 290 EYVGTHLKNGVPP---DHKCIRNYDNAGFVMGTSATLFN 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,651
Number of Sequences: 5004
Number of extensions: 58891
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)