Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_I22
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0431 + 3066701-3067729 33 0.33
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 31 0.76
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 29 3.1
05_05_0392 + 24629528-24630442 29 4.1
03_04_0220 - 18741485-18741915,18742007-18742190 29 4.1
11_04_0250 + 15335457-15335882 29 5.4
07_01_1093 + 10033403-10033984 29 5.4
07_03_0719 + 20920331-20920535,20920588-20920763,20920901-209211... 28 7.1
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490... 28 7.1
05_05_0167 - 22868506-22868580,22868693-22869103 28 7.1
03_05_0268 + 22540149-22540204,22541370-22541751 28 7.1
01_01_0005 + 21247-21294,22615-22847,22962-23033,23492-23577,244... 28 7.1
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 28 9.4
>06_01_0431 + 3066701-3067729
Length = 342
Score = 32.7 bits (71), Expect = 0.33
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = -2
Query: 701 RRDRXTQXTLHPSRRPPNAGPAAASNMTAGSLG--RRAKSPIDSA--AXHLPPERSRDRD 534
RR R +H +R+P PAAAS+ +G +R +S +D+ A PER + R
Sbjct: 65 RRARLLVHEIHVARQPVAMSPAAASSSQRRRVGPMKRTESAVDATMDATAAAPER-KFRG 123
Query: 533 LQRRPTSRF 507
+++RP ++
Sbjct: 124 VRKRPWGKY 132
>08_01_0304 -
2502760-2502774,2502844-2502921,2503035-2503103,
2503200-2503289,2503400-2503517,2505548-2505678,
2505756-2506025,2507175-2507308,2507635-2508088
Length = 452
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -3
Query: 403 IERCTGVRIPLAGTNFSNEIRTQQMFTIDFHGE 305
I RCTGV I G N +I T DFHGE
Sbjct: 157 ISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189
>12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 647 AGPAAASNMTAGSLGRRAKSPIDSAAXHLPPERSRDRDLQRRP 519
AG A T SLGR+ KS D + PER R+++ P
Sbjct: 994 AGKLAECQKTIASLGRQLKSLTDIDNTIVEPERLEPREIREMP 1036
>05_05_0392 + 24629528-24630442
Length = 304
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -1
Query: 720 PVGXIEXAGQXYAXHITSIPPSPKRRTGGRQQHDRRFPRSTGQEPD**CRXTPSPGAVSG 541
P + AG+ + PP P RR G ++ RR P + P R S GA +G
Sbjct: 156 PAAAVHGAGRPGGGRASPSPPPPPRREPG-ERPTRRSPSPATKRPPDQRRTAASAGAAAG 214
>03_04_0220 - 18741485-18741915,18742007-18742190
Length = 204
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 591 LGPSTEGTGGHVAGG-RRSGVWGTAGWM*CALRXPVPPXQXLRLGFRLXPG*XPXV 755
LG + G GG + G +R+G W T + VP LG L PG P V
Sbjct: 113 LGGACGGAGGDLYGAAKRNGGWSTFSTAKRVRKAEVPEAPSCDLGLCLSPGSPPAV 168
>11_04_0250 + 15335457-15335882
Length = 141
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 570 RGTINRALGPSTEGTGGHVAGG--RRSGVWGTAGWM 671
RG + + GG AGG RR+G WG A WM
Sbjct: 18 RGCAVLRISDRRQSRGGPTAGGGVRRAGGWGGAIWM 53
>07_01_1093 + 10033403-10033984
Length = 193
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 570 RGTINRALGPSTEGTGGHVAGGRRSGVWGTAGW 668
R T N G +GG V GR+ G+W A W
Sbjct: 84 RLTANEHGGRGCRSSGGAVETGRQLGIWEVAKW 116
>07_03_0719 +
20920331-20920535,20920588-20920763,20920901-20921111,
20921240-20921477,20921613-20921763,20921878-20922186
Length = 429
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 572 RHYQSGSWPVDRGNRRSCCWRPPVRRLG 655
R Q WPVDRG+RR PP R LG
Sbjct: 13 RREQQQRWPVDRGDRRPRRRAPP-RLLG 39
>07_01_0654 -
4900509-4900518,4900626-4900709,4900844-4901377,
4901462-4901619,4901703-4901832,4901918-4901999,
4902097-4902230,4902314-4902410,4902512-4902788,
4902881-4903024
Length = 549
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 373 LAGTNFSNEIRTQQMFTIDFHGEGITSC-NKNQTRKIIICVITG 245
L+GT+ + ++ +D G GIT+C +N+ +K ++ G
Sbjct: 28 LSGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEG 71
>05_05_0167 - 22868506-22868580,22868693-22869103
Length = 161
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 606 EGTGGHVAGGRRSGV--WGTAGWM*CALRXPVPPXQXLRLGFRL 731
EG GG + GV W GW R P+PP + R+ F+L
Sbjct: 93 EGAAAREYGGIQEGVNDWKQPGW-----RGPIPPSRGHRIQFKL 131
>03_05_0268 + 22540149-22540204,22541370-22541751
Length = 145
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 602 RRAKSPIDSAAXHLPPERSRDRDLQRRPTSRFLP 501
++AK P+D PP R R R R SRF P
Sbjct: 62 KKAKGPLDPPTTPRPPRRRRKRRRSRMFFSRFDP 95
>01_01_0005 +
21247-21294,22615-22847,22962-23033,23492-23577,
24445-24519,24883-25391
Length = 340
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 653 PNAGPAAASNMTAGSLGRRAKSPIDSAA 570
P PA A M A +LG++ +SP ++AA
Sbjct: 217 PRHVPAVAQRMIAHALGKKVESPTETAA 244
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -2
Query: 731 QAETQSEXLXRRDRXTQXTLHPSRRPPNAGPAAASNMTAGSLGRRAKSPIDSAAXH 564
Q T S L + + + +LHP+R+ A P A +N +A S+ + +P + H
Sbjct: 577 QNTTSSVPLNSQVQQSDFSLHPNRQDQFAVPHATTNNSAPSMQSQPVAPYMGHSQH 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,385,150
Number of Sequences: 37544
Number of extensions: 504425
Number of successful extensions: 1599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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